Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66190 592 / 0 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT1G20020 585 / 0 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT4G05390 311 / 1e-104 ATRFNR1 root FNR 1 (.1.2) AT1G30510 305 / 2e-102 ATRFNR2 root FNR 2 (.1.2.3) AT4G30210 78 / 2e-15 AR2, ATR2 P450 reductase 2 (.1.2) AT4G24520 77 / 4e-15 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT3G02280 63 / 2e-10 Flavodoxin family protein (.1) AT1G15140 52 / 3e-07 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) AT5G20080 44 / 0.0001 FAD/NAD(P)-binding oxidoreductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041904 [exp] 693 / 0 AT5G66190 595 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10038538 [exp] 297 / 4e-98 AT4G05390 624 / 0.0 root FNR 1 (.1.2) Lus10023266 [exp] 245 / 1e-78 AT4G05390 569 / 0.0 root FNR 1 (.1.2) Lus10015525 [exp] 80 / 7e-16 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 78 / 3e-15 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10025485 [exp] 76 / 7e-15 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 67 / 6e-12 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10002416 [exp] 60 / 9e-10 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10032842 [exp] 58 / 6e-09 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112900 [exp] 600 / 0 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.007G057200 [exp] 595 / 0 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.001G371900 [exp] 297 / 1e-98 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.005G153800 [exp] 77 / 4e-15 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.006G167200 [exp] 77 / 5e-15 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.002G106566 [exp] 72 / 3e-14 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.018G092100 [exp] 72 / 1e-13 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.004G101100 [exp] 49 / 5e-06 AT3G02280 811 / 0.0 Flavodoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10028451 pacid=23166000 polypeptide=Lus10028451 locus=Lus10028451.g ID=Lus10028451.BGIv1.0 annot-version=v1.0 ATGTCTGCTGCAGTGACTTCCGCTGCAGTCTCTTTCCCTTCTTCCAAGTCCTCCTTCCCTCTCTCTTCCAGAACCTCCATCATCCCCACTCCCGAAAGGA TCGCCTTCAAGAAGGCATCTTACGTGCAAGCTGGAGCCAGGGGAGTCGTTTCAGTCAGAGCCCAGGTCACCACCGAAGCTCCTGTTGCTAAGGTGAAAAA GGAGTCTAAGAAAGATGAAGAAGGCGTGATTGTTAACAAGTACAAGCCCAAGGAGCCTTACACTGGCAGATGTCTTTTGAACACCAAGATCACCGGCGAT GATGCCCCTGGAGAGACCTGGCACATGGTTTTCAGCACTGAAGGGGAGGTGCCTTACAGAGAAGGACAATCCATTGGGGTTATCCCAGAAGGTATTGACA AGAATGGGAAGCCACATAAGCTGAGATTGTATTCAATTGCCAGCAGTGCTCTTGGTGATTTCGGTGACTCTAAAACTGTGTCCCTATGTGTGAAGAGGCT TATTTACACCAATGATGCAGGAGAGATTGTCAAGGGAGTATGCTCCAACTTCTTGTGCGATTTGAAGCCTGGATCTGAAGTGAAGATCACTGGACCAGTA GGCAAAGAAATGCTTATGCCAAAGGATCCTAATGCCACCATTATCATGCTTGGAACCGGGACTGGAATTGCACCGTTTAGATCTTTCTTGTGGAAAATGT TCTTCGAGAAGCATGAGGACTACAAGTTCAATGGTTTGGCATGGCTCTTCTTGGGAGTTCCTACCAGCAGCTCACTGTTGTACAAGGAGGAATTTGAGAA GATGAAGGAGAAGGCACCTGAGAACTTCAGGCTAGACTTTGCAGTGAGCAGAGAGCAAACAAACGAGAAAGGTGAGAAGATGTACATCCAAACGAGAATG GCTCAGTACGCAGAGGAGTTGTGGGAGTTGCTGAAGAAAGACAACACGTACGTGTACATGTGTGGGTTGAAGGGAATGGAGAAGGGTATTGATGACATCA TGGTCGGTTTGGCTGCTAAAGAAGGAATTGAATGGCTTGATTACAAGAAGCAGTTGAAGAAGGCTGAGCAGTGGAATGTTGAAGTTTACTGA
AA sequence Show only first row Show all	>Lus10028451 pacid=23166000 polypeptide=Lus10028451 locus=Lus10028451.g ID=Lus10028451.BGIv1.0 annot-version=v1.0 MSAAVTSAAVSFPSSKSSFPLSSRTSIIPTPERIAFKKASYVQAGARGVVSVRAQVTTEAPVAKVKKESKKDEEGVIVNKYKPKEPYTGRCLLNTKITGD DAPGETWHMVFSTEGEVPYREGQSIGVIPEGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLIYTNDAGEIVKGVCSNFLCDLKPGSEVKITGPV GKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNEKGEKMYIQTRM AQYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVGLAAKEGIEWLDYKKQLKKAEQWNVEVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10028451 [exp]	0	1
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10041904 [exp]	1.0	0.9768
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10006710 [exp]	2.0	0.9716
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	3.2	0.9665
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	3.5	0.9675
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10039739 [exp]	4.9	0.9685
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10039697 [exp]	5.3	0.9484
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10005314 [exp]	5.5	0.9483
AT2G35260			unknown protein		Lus10030958 [exp]	6.0	0.9426
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	7.7	0.9510
AT1G18060			unknown protein		Lus10017999 [exp]	7.9	0.9549

Compare expression of checked genes

Lus10028451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.