Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66200 902 / 0 ARO2 armadillo repeat only 2 (.1) AT4G34940 863 / 0 ARO1 armadillo repeat only 1 (.1) AT4G36030 780 / 0 ARO3 armadillo repeat only 3 (.1) AT3G26600 348 / 2e-111 ARO4 armadillo repeat only 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041905 [exp] 1211 / 0 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10025059 [exp] 842 / 0 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10027837 [exp] 474 / 1e-162 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10037086 [exp] 360 / 5e-120 AT5G66200 354 / 3e-118 armadillo repeat only 2 (.1) Lus10027838 [exp] 344 / 1e-114 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10036897 [exp] 290 / 2e-90 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10037087 [exp] 252 / 7e-80 AT5G66200 221 / 1e-68 armadillo repeat only 2 (.1) Lus10005065 [exp] 211 / 5e-65 AT4G34940 239 / 2e-76 armadillo repeat only 1 (.1) Lus10004620 [exp] 192 / 1e-52 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113000 [exp] 1002 / 0 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.004G172500 [exp] 897 / 0 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 860 / 0 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.010G045500 [exp] 207 / 2e-58 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.015G082800 [exp] 204 / 4e-57 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10028452 pacid=23166111 polypeptide=Lus10028452 locus=Lus10028452.g ID=Lus10028452.BGIv1.0 annot-version=v1.0 ATGGCGGACTTGGTCAAGCAGATCTTGGCGAAGCCAATCCAACTGGCCGACCACGTCATCAAATCCGCCGACGAAGCCAGCTCCTTCAAGCAGGAGTGCG CAGAGCTCAAATCCAAGACCGAAAAGCTCGCCGCTTTACTCCGTCAAGCCGCTAGGGCAAGTTCCGACCTTTACGAGCGCCCCACCCGCCGCATAATCGA CGACACCGAACAAGTCCTCGACAAAGCCCTAGCCTTGGTATTCAAATGCAGAGCCAACGGGATTATGAAGCGCGTCTTCACCATCATCCCTACCGCCGCC TTCCGTAAGATGTCGGCTCAGCTCGAGAACTCAATCGGCGACGTCTCCTGGCTCCTCCGTGTCTCCGCCCCTGCCGACGACCGTGACAACGAGTATCTCG GACTCCCTCCCATCGCCGCCAACGAGCCCATCCTCTGCCTGATTTGGGAGCAGATCGCGATTCTCTACACCGGCTCCCTCGACGACAGATCTGACGCCGC CGCCTCGCTCGTTTCCCTTGCTAGAGACAACGATCGGTACGGTAAGTTGATCATCGAGGAAGGAGGTGTTCAGCCGCTGTTGAAATTGGTCAAAGATGGG AAAGCTGAAGGTCAGGAGAACGCCGCCAGGGCGATCGGGTTGCTCGGACGGGACCCGGAAAGTGTGGAGCATATGATTCACGCCGGGGTTTGCTCCGTCT TTGCCAAAATCTTGAAAGAAGGTCCGATGAAGGTTCAGGCTGTAGTAGCTTGGGCAGTGTCCGAGCTGGCTGCTCATTACAGGAAGTGTCAAGACCTCTT TGCTCAACACAATATAATCAGATTGTTGGTTGGCCATCTGGCATTCGAGACTGTTCAGGAACACAGTAAGTACGCCATTGTTAGCCAGAAGGCTACTTCT ATCCACGCTGTGTTATTGGCTAGCAACAACAACAGTAACAATTCCACCAACGTTTCTGTTCCTAGTACCAATTTTGAGGAAGATAAGAGCAGGATTTCTC ATCCCTTAGGGAATAGAACTAGGAGCCAGTTTCATAATGTGATTGAGAACACATTGGCCATGAATGCTGGCACTAAGCTTGGTAATGGGAATATGAATGT TCCTTTGGTTAGTAATGGGAATGGGAACGGGAACATGAATGTTGTTGTTGCTAAGCAGGCTGCTACTATTCACCATCAGCACACCAATTCGTTATCGGCT GTGAATCTTAAAGGGAGGGAAAGCGAAGATCCAACTGTTAAGGCTCGGATGAAAGCAATGGCTGCAAGAGCTCTTTGGCATCTTGCGAAAGGGAATTCGC CTATTTGTCGGAGCATTACCGAGTCGAGAGCTCTCCTGTGTTTTGCAGTTCTATTGGAGAAAGGAAGTGGAGAAGAACAGTACAATTCAGCCATGGCAGT GATGGAGTTGACAGCAGTAGCGGAAGAGGATTCCGATCTGAGAAGAGCTGCATTCAAGCCCAATGCTCCTGCTTGTAAAGCTGTGGTGGATCAAATGTTG AAGATCATCGAGGAAGCGGATTCAGAGCTTTTGATACCTTGTGTCAAGGCGATTGGAAATTTGGCGAGGACGTTCAGAGCTACAGAGACCAGGATGATTT CGCCGCTGGTTAAGCTCTTGGATGAGAGGGAGGCTGAGGTTTCCAGAGAGGCTTCAATTGCTCTCACCAAGTTTGCCCGTTCCGATAACTACCTCCACCT CGATCACTGTAAGGGAATCATAACTGCCGGCGGGGCAAAGCATTTGATCCAGCTGGTGTACTTTGGTGAACAAGTGGTTCAGATATCATCTCTGGTACTT CTTTGCTACATTGCTCTGCATGTTCCAGATAGCGAGGAGCTCGCAAAGGCAGAAGTGTTGACTGTTCTGGAATGGGCTTGCAAGCAAGCTTTCATCGCAC AGAATGAAATACTGGATCAGCTCCTTCCTGAAGCCAAGAGCAGATTGGAACTCTACCAATCAAGAGGTTCAAGGGGTTTCCATTAA
AA sequence Show only first row Show all	>Lus10028452 pacid=23166111 polypeptide=Lus10028452 locus=Lus10028452.g ID=Lus10028452.BGIv1.0 annot-version=v1.0 MADLVKQILAKPIQLADHVIKSADEASSFKQECAELKSKTEKLAALLRQAARASSDLYERPTRRIIDDTEQVLDKALALVFKCRANGIMKRVFTIIPTAA FRKMSAQLENSIGDVSWLLRVSAPADDRDNEYLGLPPIAANEPILCLIWEQIAILYTGSLDDRSDAAASLVSLARDNDRYGKLIIEEGGVQPLLKLVKDG KAEGQENAARAIGLLGRDPESVEHMIHAGVCSVFAKILKEGPMKVQAVVAWAVSELAAHYRKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSQKATS IHAVLLASNNNSNNSTNVSVPSTNFEEDKSRISHPLGNRTRSQFHNVIENTLAMNAGTKLGNGNMNVPLVSNGNGNGNMNVVVAKQAATIHHQHTNSLSA VNLKGRESEDPTVKARMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGSGEEQYNSAMAVMELTAVAEEDSDLRRAAFKPNAPACKAVVDQML KIIEEADSELLIPCVKAIGNLARTFRATETRMISPLVKLLDEREAEVSREASIALTKFARSDNYLHLDHCKGIITAGGAKHLIQLVYFGEQVVQISSLVL LCYIALHVPDSEELAKAEVLTVLEWACKQAFIAQNEILDQLLPEAKSRLELYQSRGSRGFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10028452 [exp]	0	1
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	2.2	0.8641
AT4G24200			Transcription elongation facto...		Lus10017630 [exp]	2.4	0.8589
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	6.3	0.8612
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	11.0	0.8473
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022748 [exp]	11.0	0.8415
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10022281 [exp]	11.2	0.8451
AT5G01710			methyltransferases (.1)		Lus10014232 [exp]	19.0	0.8277
AT5G42570			B-cell receptor-associated 31-...		Lus10030043 [exp]	20.5	0.8316
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10005966 [exp]	26.8	0.8260
AT3G18930			RING/U-box superfamily protein...		Lus10012033 [exp]	28.1	0.8166

Compare expression of checked genes

Lus10028452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.