Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36040 135 / 3e-41 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT2G17880 135 / 4e-41 Chaperone DnaJ-domain superfamily protein (.1) AT3G13310 81 / 1e-19 Chaperone DnaJ-domain superfamily protein (.1) AT4G13830 75 / 1e-17 J20 DNAJ-like 20 (.1.2) AT4G39960 66 / 7e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 63 / 4e-12 DNAJ heat shock family protein (.1) AT4G37480 62 / 1e-11 Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 61 / 2e-11 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G59980 61 / 3e-11 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G80030 60 / 4e-11 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041906 [exp] 209 / 2e-70 AT4G36040 144 / 8e-45 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10017263 [exp] 106 / 2e-29 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10034484 [exp] 103 / 5e-29 AT4G36040 100 / 3e-28 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10025060 [exp] 92 / 2e-24 AT4G36040 102 / 7e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10032957 [exp] 83 / 9e-21 AT3G13310 109 / 2e-31 Chaperone DnaJ-domain superfamily protein (.1) Lus10013558 [exp] 78 / 2e-19 AT4G36040 82 / 1e-21 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10002356 [exp] 74 / 1e-16 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10003150 [exp] 73 / 2e-16 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10002355 [exp] 72 / 7e-16 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113100 [exp] 154 / 6e-49 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 126 / 1e-37 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G131800 [exp] 120 / 5e-36 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020800 [exp] 114 / 1e-32 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 111 / 1e-31 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 110 / 4e-31 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G469600 [exp] 84 / 5e-21 AT3G13310 120 / 4e-35 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G166500 [exp] 80 / 3e-19 AT3G13310 115 / 4e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G107600 [exp] 76 / 4e-18 AT3G13310 109 / 4e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G001301 [exp] 75 / 2e-17 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10028453 pacid=23166021 polypeptide=Lus10028453 locus=Lus10028453.g ID=Lus10028453.BGIv1.0 annot-version=v1.0 ATGATACCCACAGCAGTTATTTCTCCTCCTCTTTCCCCCGTCTTCCAATTCTCCCCCAAATCCCCCTCCTCCTCCTCCTCCGCTTCCGGCCGCCGCTCCC AATCTGGGCCACCTCCGATCTACAATTCGGCGACCGCGTACAGGGAGAGACCCAGGGTCTCCATGCCTCCTCCTAAGATGCCCTCCTCATCCTCTCTTTA CGAGATCCTAGGGATTCCGAACGGCGCCTCCAGCCAGGAGATCAAATCGGCCTACAGGAAGCTCGCGAGGACTTGCCATCCAGATGTGGCTGCGATCGAT CGCAAAGACAACTCCGCTGACGAGTTCATGAGGATCCACGCCGCCTACACCACTCTCTCCGATCCCGAGAGGCGCGTCGTTTACGATCGGAAGCAGCTCT TCAGGCGGATGCAGCCGCTCACCACCGCCGGATTGTCCGGATACAGCGGGCGGAGCTGGGAGACCGATCAGTGCTGGTGA
AA sequence Show only first row Show all	>Lus10028453 pacid=23166021 polypeptide=Lus10028453 locus=Lus10028453.g ID=Lus10028453.BGIv1.0 annot-version=v1.0 MIPTAVISPPLSPVFQFSPKSPSSSSSASGRRSQSGPPPIYNSATAYRERPRVSMPPPKMPSSSSLYEILGIPNGASSQEIKSAYRKLARTCHPDVAAID RKDNSADEFMRIHAAYTTLSDPERRVVYDRKQLFRRMQPLTTAGLSGYSGRSWETDQCW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17880			Chaperone DnaJ-domain superfam...		Lus10028453 [exp]	0	1
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10041906 [exp]	1.0	0.9497
AT1G27290			unknown protein		Lus10003121 [exp]	6.2	0.9282
AT4G39040			RNA-binding CRS1 / YhbY (CRM) ...		Lus10028787 [exp]	6.6	0.8797
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	6.8	0.9296
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10015625 [exp]	10.2	0.9153
AT2G24550			unknown protein		Lus10020142 [exp]	11.0	0.9201
AT5G27830			unknown protein		Lus10029881 [exp]	11.1	0.9222
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10010442 [exp]	12.9	0.8646
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10012811 [exp]	14.1	0.9142
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	14.3	0.9175

Compare expression of checked genes

Lus10028453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.