Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72200 80 / 1e-17 RING/U-box superfamily protein (.1) AT1G22500 71 / 2e-14 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT5G10380 70 / 3e-14 ATRING1, RING1 RING/U-box superfamily protein (.1) AT5G01880 67 / 3e-14 RING/U-box superfamily protein (.1) AT4G17905 70 / 4e-14 ATL4H RING/U-box superfamily protein (.1) AT3G03550 70 / 4e-14 RING/U-box superfamily protein (.1) AT1G35330 69 / 7e-14 RING/U-box superfamily protein (.1) AT4G40070 69 / 7e-14 RING/U-box superfamily protein (.1) AT2G35000 69 / 1e-13 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT3G05200 68 / 2e-13 ATL6 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041907 [exp] 342 / 6e-115 AT4G36050 410 / 6e-135 endonuclease/exonuclease/phosphatase family protein (.1.2) Lus10012745 [exp] 70 / 4e-14 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10043426 [exp] 69 / 4e-14 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10025338 [exp] 68 / 4e-14 AT4G17905 99 / 4e-25 RING/U-box superfamily protein (.1) Lus10022743 [exp] 68 / 4e-14 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10034157 [exp] 69 / 5e-14 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10004460 [exp] 69 / 1e-13 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10029456 [exp] 65 / 1e-13 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10000333 [exp] 68 / 2e-13 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113200 [exp] 80 / 2e-18 AT2G17450 66 / 2e-13 RING-H2 finger A3A (.1) Potri.007G057300 [exp] 77 / 6e-18 AT2G17450 66 / 1e-13 RING-H2 finger A3A (.1) Potri.010G243200 [exp] 76 / 3e-17 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1) Potri.008G019000 [exp] 76 / 3e-17 AT5G06490 131 / 8e-39 RING/U-box superfamily protein (.1) Potri.009G073900 [exp] 74 / 6e-16 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.002G153400 [exp] 71 / 3e-15 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 73 / 4e-15 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 73 / 5e-15 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 72 / 1e-14 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.014G076800 [exp] 70 / 1e-14 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10028454 pacid=23166147 polypeptide=Lus10028454 locus=Lus10028454.g ID=Lus10028454.BGIv1.0 annot-version=v1.0 ATGGACTATCTAATCAACGCTCGCCATCTCCAACCCTCAAGCCGAAGAATTCTTCTGGATTCCGCTATGCTACCTGGAGAAAACCGCAGCTCTCTGATGT TGAGGATCCTGCTCACTTGCGGCACCTTCGCCATTCTTTTCGCCGTTCTCTGCTTCTTCGCCGTGTGCCTCGGCAAATGCTGTCAGTCATCAGCTGAGTC GTCCAACCAGGAAACGAATAATAGCGAGAATCGTAATGCGGTGTCGAAGAAGAAGAGGGAACAAGTGGTGACGCAAGTTCTGACGACGTTTCCGGCGTAC GCCTACGGCGCCGAAGAATCTCCACCGTTGGATCAGTCACGGTGTTGCTCTGCGGCTTCGGTTTGCTCCATCTGCCTGGGCGAGTATCAGAAGGGGGAAT GTTTAAGGCTGCTGCCGAAGTGTGGCCATGTCTTCCACAAGGGGTGCATCGACCTATGGCTATCGACTCGCTCTTCCAACTGTCCGATTTGCAGGGACCC GGCTGTGGTTGTCACCAACGTCGAACAGTCTTCCAGTGACGGAGGAGTTAGAGGAACTGGGAGGAGTTTGATTTCATCGTGGAATGTCAATTTCGGTACT GGTAACGTTCTCTAA
AA sequence Show only first row Show all	>Lus10028454 pacid=23166147 polypeptide=Lus10028454 locus=Lus10028454.g ID=Lus10028454.BGIv1.0 annot-version=v1.0 MDYLINARHLQPSSRRILLDSAMLPGENRSSLMLRILLTCGTFAILFAVLCFFAVCLGKCCQSSAESSNQETNNSENRNAVSKKKREQVVTQVLTTFPAY AYGAEESPPLDQSRCCSAASVCSICLGEYQKGECLRLLPKCGHVFHKGCIDLWLSTRSSNCPICRDPAVVVTNVEQSSSDGGVRGTGRSLISSWNVNFGT GNVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72200			RING/U-box superfamily protein...		Lus10028454 [exp]	0	1
AT1G53120			RNA-binding S4 domain-containi...		Lus10005545 [exp]	8.1	0.7308
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10037846 [exp]	13.0	0.6967
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	13.9	0.7196
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10028526 [exp]	16.4	0.7638
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10022387 [exp]	18.0	0.7337
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10036912 [exp]	21.6	0.6654
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	28.9	0.7291
AT2G40770			zinc ion binding;DNA binding;h...		Lus10030512 [exp]	29.2	0.6987
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	40.6	0.7094
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	48.5	0.6680

Compare expression of checked genes

Lus10028454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.