Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36050 627 / 0 endonuclease/exonuclease/phosphatase family protein (.1.2) AT2G41460 78 / 6e-15 ARP apurinic endonuclease-redox protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041907 [exp] 840 / 0 AT4G36050 410 / 6e-135 endonuclease/exonuclease/phosphatase family protein (.1.2) Lus10000437 [exp] 76 / 3e-14 AT2G41460 541 / 0.0 apurinic endonuclease-redox protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G057400 [exp] 542 / 0 AT4G36050 622 / 0.0 endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.005G113301 [exp] 149 / 3e-41 AT4G36050 152 / 4e-44 endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.016G042000 [exp] 80 / 1e-15 AT2G41460 590 / 0.0 apurinic endonuclease-redox protein (.1.2) Potri.005G113250 [exp] 69 / 2e-14 AT4G36050 0 / 1 endonuclease/exonuclease/phosphatase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF06839 [flax] [poplar] zf-GRF GRF zinc finger CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10028455 pacid=23166109 polypeptide=Lus10028455 locus=Lus10028455.g ID=Lus10028455.BGIv1.0 annot-version=v1.0 ATGGGTAATTTCTGGGGAAAATCCGAGACGAGGAAAAAGGTGCGAACAATGGAGACGGAAGGAGTAGCAAACGGACTGAAGATTGTGACTTACAACGTCA ATGGGCTGAGGCAACGCATCTCACAATTTGGTTCTCTTCTTAAACTGCTTGATTCTTTCGATGCCGACATCATCTGCTTTCAGGAAACGAAATTGAGGAG GCAAGAATTAACGTCTGATGTGGTGATGGCTGATGGGTACGAATCCTTCTTCTCTTGTACGCGCACTAGTGATAAAGGGCGGACTGGATACTCAGGTGTG GCAACTTTTTGCCGGGTTAAGTCAGCATTTTCAAGTACAGAAGTGGTATTGCCCATTGCTGCAGAGGAAGGTTTCACTGGTCTAGTTGATAGATCCAAAA CCAGCAAAGATGCTGGGCCAGTGATGGTGGAGGGACTCGAGGAGGAGCTTGACAAGGATGAGCTTCTTAAGCTTGATAGTGAGGGAAGGTGTATTATCAC TGATCACTGTCATTTCGTTCTTTTTAACATATACGGACCTCGAGCAGACCCTAGTGACACAGAGAGGGTTAAGTTTAAGTTCAATTTTTATAAGATATTG AGGAAAAGATGGGATAATCTGCTAGATCGAGGAAGGAGGGTGTTTGCCGTTGGTGATCTCAACATTGCTCCTTCTTCTATGGATAGATGTGAAGCCGGTC CAGAATTTGAGAAGAATGAGTTCCGGATGTGGTTTAGATCTTTGCTAGTGCAAGCAGGAGGGCGTTTCTCTGATGTTTTCAGAGATAAACATCCTGATAG AAAAGATGCATACACATGCTGGTCAACCAGTACAGGCGCTGAACAATTTAATTACGGAAGTAGAATTGATCATATTCTCTGTGCTGGATCATGCTTGCAT GAAGTGGATGATGATGATCAACAATGCCACAGAATCGTTAGTTGTCATGTCAAAGAGTGTGACATATTGATGGAGTACAAACGTTGGAAACCTGGAAATA CAGCTAGGTTTAGATGGAAAGGAGAAAGGGACATCAAACTCGAAGGTTCAGATCATGCTCCTGTATCTGTGACTTTGATACACATTCCTGATGTATGCCA ACATAGCACCCCACCCCTATCGTCGAAATATCTCCCCATGGTTCGAGGTCTCCAACAAACGCTTGTATCTGTGTTGGCGAAAAGACAAGCTTCGACGCAG ACTCAGTCTTGCATTGTATCAAGTTCATCTTCAGATGGTAATAGTTGCAATATAGCTGAACCTTCTACCATAGATTCGGGTTCCCAGGACAAAGATGCTG GTGGAAATTCAGTGCCTGCTGCAAGAAGTGAGAAGAAAGCAAGAAAGGGTCAACTTTCCCTAAGGTCATTTTTCCAGACAAGCTCAAAAGGTGCCAGTGT GTCTGACATTTCCCACCTTCCGATTCCCCTGAGCGTCAGTTCCACGTCAAATGATCAGCACGGAAGTCTCGAACCAGATGAACCAAGGCCGAGTGGTGGA AGTCAGGATGATGATCAAGAGCATGCTTCTGCTGATTTTGTAACGAAAAAAAAGAACAGCAATGCCTTGTTGGAGTGGCAGAGGATACAACAACTGATGC AGAACAGCATCCCTCTCTGCAAAGGCCATAAAGAACCATGCGTTGCTCGGGTTGTCCGGAAACCCGGCCCGACTTTCGGCCGAAGATTTTACGTCTGTGC TCGAGCAGAGGTAATTTGGGACCTTCCACAAATGTTGAAGCAAACTGTGGTTACTTCAAATGGGCATCCTCAAAATCTCGACATTAATGAGAAGGAAACT TCTGGGAACAGCGCTTGGAGGTTTCCTATCCGCAACTAA
AA sequence Show only first row Show all	>Lus10028455 pacid=23166109 polypeptide=Lus10028455 locus=Lus10028455.g ID=Lus10028455.BGIv1.0 annot-version=v1.0 MGNFWGKSETRKKVRTMETEGVANGLKIVTYNVNGLRQRISQFGSLLKLLDSFDADIICFQETKLRRQELTSDVVMADGYESFFSCTRTSDKGRTGYSGV ATFCRVKSAFSSTEVVLPIAAEEGFTGLVDRSKTSKDAGPVMVEGLEEELDKDELLKLDSEGRCIITDHCHFVLFNIYGPRADPSDTERVKFKFNFYKIL RKRWDNLLDRGRRVFAVGDLNIAPSSMDRCEAGPEFEKNEFRMWFRSLLVQAGGRFSDVFRDKHPDRKDAYTCWSTSTGAEQFNYGSRIDHILCAGSCLH EVDDDDQQCHRIVSCHVKECDILMEYKRWKPGNTARFRWKGERDIKLEGSDHAPVSVTLIHIPDVCQHSTPPLSSKYLPMVRGLQQTLVSVLAKRQASTQ TQSCIVSSSSSDGNSCNIAEPSTIDSGSQDKDAGGNSVPAARSEKKARKGQLSLRSFFQTSSKGASVSDISHLPIPLSVSSTSNDQHGSLEPDEPRPSGG SQDDDQEHASADFVTKKKNSNALLEWQRIQQLMQNSIPLCKGHKEPCVARVVRKPGPTFGRRFYVCARAEVIWDLPQMLKQTVVTSNGHPQNLDINEKET SGNSAWRFPIRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36050			endonuclease/exonuclease/phosp...		Lus10028455 [exp]	0	1
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	2.2	0.8479
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	3.0	0.8051
AT1G29350			Kinase-related protein of unkn...		Lus10000188 [exp]	3.5	0.8009
AT1G22460			O-fucosyltransferase family pr...		Lus10008719 [exp]	5.9	0.7947
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	7.7	0.7999
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Lus10012118 [exp]	8.1	0.7987
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10029359 [exp]	8.4	0.7687
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10038946 [exp]	8.5	0.7231
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10015893 [exp]	9.0	0.7911
AT1G51610			Cation efflux family protein (...		Lus10034818 [exp]	12.0	0.7617

Compare expression of checked genes

Lus10028455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.