Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19860 157 / 5e-46 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36060 136 / 2e-38 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G54680 67 / 9e-13 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G51070 58 / 1e-09 bHLH bHLH115 basic Helix-Loop-Helix 115, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G14410 58 / 2e-09 bHLH bHLH104 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23210 58 / 2e-09 bHLH bHLH34, bHLH034 basic Helix-Loop-Helix 34, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G47640 54 / 3e-08 bHLH PYE, bHLH047, POPEYE, PYE1 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041908 [exp] 390 / 1e-137 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10011167 [exp] 71 / 3e-14 AT5G54680 331 / 4e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043076 [exp] 70 / 1e-13 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022186 [exp] 64 / 8e-12 AT4G14410 218 / 4e-71 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10020069 [exp] 64 / 1e-11 AT5G54680 231 / 5e-77 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021199 [exp] 60 / 2e-10 AT4G14410 221 / 2e-72 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041148 [exp] 60 / 2e-10 AT4G14410 211 / 1e-68 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021876 [exp] 60 / 2e-10 AT4G14410 214 / 4e-70 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10024233 [exp] 59 / 4e-10 AT3G47640 187 / 4e-59 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113400 [exp] 195 / 2e-60 AT3G19860 211 / 1e-66 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G129600 [exp] 169 / 2e-50 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G168100 [exp] 166 / 2e-49 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G132400 [exp] 72 / 2e-14 AT5G54680 222 / 7e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G074400 [exp] 64 / 5e-12 AT3G47640 158 / 5e-48 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.015G142700 [exp] 64 / 1e-11 AT3G47640 170 / 1e-52 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.004G031800 [exp] 63 / 2e-11 AT5G54680 226 / 8e-75 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G031000 [exp] 62 / 4e-11 AT5G54680 264 / 2e-89 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G072900 [exp] 57 / 2e-09 AT4G14410 230 / 7e-76 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G165700 [exp] 56 / 5e-09 AT4G14410 181 / 1e-56 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10028456 pacid=23165967 polypeptide=Lus10028456 locus=Lus10028456.g ID=Lus10028456.BGIv1.0 annot-version=v1.0 ATGAATCAGCGGAAGGCAGCAGACGATTCAATTCATGAACCCAGGCAGAGACAGGAAGTGGAAGCGAAGGACCCAATTGCTGCTAGGAAAGTTCAGAAAG CAGACCGCGAGAGATTGAGGAGGGACCGTTTGAACGAGCAGTTCCTTGAATTGGGTCATACCCTAGATCCAGAGAGGCCTAAGAATGACAAGGCAACAAT CTTGACGGATACAATTCAAATCCTCAAGGATCTAACATCTGAAGTAGACAGACTAAAGACCGAATGCGCTGCACTCTCGGAGGAATCACGCGAGCTTATG CAAGAAAAGAACGAGTTAAGAGAGGAGAAGGCATCGTTGAAATCCGATGTCGAGAATCTCAACATCCAGTATCAACAGAGACTCCGAGTTATGTTCCCAT GGGGTCCTGTCGATCCGTCCGTAGTTATGGGACCCGCTTATTCCTATGCCGTCCCTGTACCGGTGCCTCCCGGTCCAATGCCCATGCATCATCCACAAAT GCAGCCATTCCCCTTCTTCAGAAATCAACCTCCTAATGCTGCAACTTTCATGCCGTACCCAACTCCTCCTAACCCTCCGAATGAACACCCATCGGCTCAA AGTGCTGCTGCTGCTTCCCATGGTTCGAGCAAACCCGATCCTAAAAGCAAGTCAGTAGGTAGCCATACTGAAAGCTGTGACGACTCTGCAGATGTTGCGA CTGAGCTTGTTCTTAAAATGCCCGGATCGTCTTCTCAACAGGAGATGCCAGGAGTGGAAAGGAAACGCAAGCTGTTGCAGAGGAAGGAAAAGGATGTTGG ATGTGTCGTATCTTCGTCTAGCCTGAGTTCTTCCCCTCTAACGATATATGATAACTCCTTTAATAGCGTTAATGACGTGGGATCATCAAAGCCTTGA
AA sequence Show only first row Show all	>Lus10028456 pacid=23165967 polypeptide=Lus10028456 locus=Lus10028456.g ID=Lus10028456.BGIv1.0 annot-version=v1.0 MNQRKAADDSIHEPRQRQEVEAKDPIAARKVQKADRERLRRDRLNEQFLELGHTLDPERPKNDKATILTDTIQILKDLTSEVDRLKTECAALSEESRELM QEKNELREEKASLKSDVENLNIQYQQRLRVMFPWGPVDPSVVMGPAYSYAVPVPVPPGPMPMHHPQMQPFPFFRNQPPNAATFMPYPTPPNPPNEHPSAQ SAAAASHGSSKPDPKSKSVGSHTESCDDSADVATELVLKMPGSSSQQEMPGVERKRKLLQRKEKDVGCVVSSSSLSSSPLTIYDNSFNSVNDVGSSKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10028456 [exp]	0	1
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022543 [exp]	3.0	0.8378
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	4.4	0.8754
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	6.8	0.8630
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10031991 [exp]	6.9	0.7736
AT1G56220			Dormancy/auxin associated fami...		Lus10020661 [exp]	9.2	0.8554
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10042322 [exp]	9.5	0.8496
					Lus10043038 [exp]	10.5	0.8354
AT5G52190			Sugar isomerase (SIS) family p...		Lus10014993 [exp]	13.0	0.8432
AT5G24490			30S ribosomal protein, putativ...		Lus10015569 [exp]	13.2	0.8437
AT5G47040		LON2	lon protease 2 (.1)		Lus10040131 [exp]	13.4	0.8547

Compare expression of checked genes

Lus10028456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.