Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17890 858 / 0 CPK16 calcium-dependent protein kinase 16 (.1) AT5G66210 851 / 0 CPK28 calcium-dependent protein kinase 28 (.1.2.3.4) AT4G36070 825 / 0 CPK18 calcium-dependent protein kinase 18 (.1.2) AT3G50530 457 / 2e-156 CRK CDPK-related kinase (.1.2) AT5G19360 437 / 2e-149 CPK34 calcium-dependent protein kinase 34 (.1) AT5G12180 436 / 4e-149 CPK17 calcium-dependent protein kinase 17 (.1) AT1G49580 439 / 5e-149 Calcium-dependent protein kinase (CDPK) family protein (.1) AT1G50700 434 / 3e-148 CPK33 calcium-dependent protein kinase 33 (.1) AT2G41140 433 / 4e-147 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT4G21940 431 / 1e-146 CPK15 calcium-dependent protein kinase 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041914 [exp] 1004 / 0 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10002966 [exp] 460 / 9e-157 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10025270 [exp] 441 / 4e-150 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10017537 [exp] 436 / 5e-150 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10008875 [exp] 441 / 8e-150 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10008958 [exp] 430 / 5e-147 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10032640 [exp] 430 / 7e-147 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10038460 [exp] 430 / 1e-146 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10023234 [exp] 431 / 5e-146 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G057600 [exp] 914 / 0 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4) Potri.005G113600 [exp] 910 / 0 AT5G66210 870 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4) Potri.005G135900 [exp] 461 / 9e-158 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.007G040800 [exp] 458 / 1e-156 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.004G143700 [exp] 451 / 9e-154 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 436 / 2e-148 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.009G105700 [exp] 436 / 3e-148 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.012G023300 [exp] 436 / 4e-148 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.010G244800 [exp] 430 / 6e-146 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G040500 [exp] 429 / 7e-146 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10028459 pacid=23166166 polypeptide=Lus10028459 locus=Lus10028459.g ID=Lus10028459.BGIv1.0 annot-version=v1.0 ATGGGATCGAGGAGAGTTAGTGGGACGGTTCCTTTTGGTAAAAGGACGGATTTTGGATACGATAAGGATTTCAATAAGCGGTATACGATTGGGAAACTGT TGGGTCATGGCCAATTTGGGTATACGTATGTTGCTACGGATAAGGGTAATGGAGATCGTGTTGCCGTCAAGCGGATTGACAAAGGCAAGATGATTCTTCC GATTGCTGTTGAAGACGTCAAAAGAGAAGTGAAGATTTTGCGGCAACTTGCAGGGCATGAGAACGTGGTTCACTTTGTTAATGCTTTCGAGGATGATTCA TATGTTTTTATAGTTATGGAGTTATGTGAAGGTGGTGAACTGCTAGACCGCATACTAGCCAAAAAGGACAGCCGGTATAGTGAGAAAGATGCAGCAGTAA TTGTACGGCAGATGCTCAAAGTAGCAGCGGAATGCCATTTACACGGTTTAGTCCATCGTGATATGAAACCCGAGAATTTTCTTTTCAAGTCCACAAAAGA GGACTCAGCTCTGAAGGCTACAGATTTTGGGTTGTCAGACTACATAAAGCCAGGAAAGAAGTTCCATGACATTGTTGGCAGTGCTTATTATGTTGCTCCT GAAGTCCTACAACGGAAGTCTGGACCTGAATCAGATGTCTGGAGCATTGGTGTTATTACGTATATTTTGCTCTGTGGAAGGCGGCCCTTTTGGGATAAGA CTGAGGATGGCATATTCAAGGAGGTCTTAAGAAACAAACCTGATTTCCGCCGCAAACCATGGCCAACTATCAGCCACAGTGCCAAAGATTTCATAAGGAA GTTGCTTGTGAAGGATCCCCGTGCTAGACTCACTGCCGCTCAAGCTCTTTCACACCCATGGGTTCGTGAAGGAGGAGATGCATCCGAGATTCCAATTGAC ATATCTGTTCTGAAGAACATGAGACAATTTGTGAAGTACAGCCGTTTGAAACAGTTTGCTCTCAGGGCATTGGCTAGCACAATTAACGAAGAGGAGCTAG CTGATCTCAAGGACCAATTTGATGCAATTGACATTGATAAAAATGGTTCTATCAGTCTTGAAGAGATGAGACAGGCACTTGCCAAAGATCTTCCTTGGAA GTTGAAAGAGTCGCGTGTTCTAGAAATTCTTCAAGCGATCGACAGTAACACAGATGGACTAGTTGATTTCCCCGAGTTCGTGGCAGCTGCTCTGCATGTG CATCAGTTGCAAGAACACAACTCTGAGAAGTGGGAGGAACGATCTCAGGCTGCTTTTGACAAATTTGACATCGACGGAGATGGTTATATAACCCCTGACG AGCTTAGAATGCACACTGGGTTAAGGGGCTCAATTGACCCACTTCTGGAGGAGGCAGATATTGACAAAGATGGCAAAATAAGCCTTTCGGAGTTCCGCAG ACTTCTAAGAACTGCAAGCATGGGATCAAGAACTTTGCCAAGTCCATCCGGCCACCGCAATTCTCGGAGACTCTAA
AA sequence Show only first row Show all	>Lus10028459 pacid=23166166 polypeptide=Lus10028459 locus=Lus10028459.g ID=Lus10028459.BGIv1.0 annot-version=v1.0 MGSRRVSGTVPFGKRTDFGYDKDFNKRYTIGKLLGHGQFGYTYVATDKGNGDRVAVKRIDKGKMILPIAVEDVKREVKILRQLAGHENVVHFVNAFEDDS YVFIVMELCEGGELLDRILAKKDSRYSEKDAAVIVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSALKATDFGLSDYIKPGKKFHDIVGSAYYVAP EVLQRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISHSAKDFIRKLLVKDPRARLTAAQALSHPWVREGGDASEIPID ISVLKNMRQFVKYSRLKQFALRALASTINEEELADLKDQFDAIDIDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFPEFVAAALHV HQLQEHNSEKWEERSQAAFDKFDIDGDGYITPDELRMHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRTASMGSRTLPSPSGHRNSRRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	0	1
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10027742 [exp]	1.4	0.8994
AT4G12720		ATNUDX7, GFG1, ...	GROWTH FACTOR GENE 1, Arabidop...		Lus10006365 [exp]	1.4	0.9205
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	2.8	0.8923
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	3.2	0.8491
AT4G33780			unknown protein		Lus10035665 [exp]	3.2	0.8896
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10003466 [exp]	6.2	0.8974
AT5G66900			Disease resistance protein (CC...		Lus10022464 [exp]	6.3	0.8236
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	6.9	0.8824
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	7.4	0.8475
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	9.4	0.8530

Compare expression of checked genes

Lus10028459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.