Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17940 81 / 2e-18 Plant protein of unknown function (DUF827) (.1) AT3G51220 74 / 1e-15 Plant protein of unknown function (DUF827) (.1) AT1G75720 68 / 1e-13 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041916 [exp] 356 / 6e-125 AT2G17940 102 / 2e-26 Plant protein of unknown function (DUF827) (.1) Lus10024335 [exp] 76 / 2e-16 AT1G75720 117 / 8e-33 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Lus10016626 [exp] 45 / 4e-05 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 45 / 4e-05 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10015482 [exp] 41 / 0.0005 AT1G58070 108 / 6e-28 unknown protein Lus10019953 [exp] 41 / 0.0007 AT1G58070 99 / 3e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114400 [exp] 164 / 5e-50 AT2G17940 111 / 2e-30 Plant protein of unknown function (DUF827) (.1) Potri.002G023000 [exp] 108 / 9e-29 AT1G75720 108 / 2e-29 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G238500 [exp] 93 / 1e-22 AT1G75720 82 / 3e-19 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.003G009400 [exp] 46 / 8e-06 AT1G58070 48 / 1e-06 unknown protein Potri.004G222800 [exp] 45 / 2e-05 AT1G58070 60 / 1e-10 unknown protein Potri.001G369200 [exp] 45 / 5e-05 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.019G021000 [exp] 42 / 0.0002 AT1G75720 42 / 8e-05 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028461 pacid=23166126 polypeptide=Lus10028461 locus=Lus10028461.g ID=Lus10028461.BGIv1.0 annot-version=v1.0 ATGCAAAGAGAAAAAGGTCATGTGGTGGTGATGGGTCGAGCAGAGATCGATACTCGAGCCCCCTTCAGTTCTGTTAAAGAGGCTGTCATGTTGTTCGGCG AGAGAGTTTTGGCTGGTGAAATCTATGCCAACAAGCTCAAAGAAATTAAGGAAGAGAGTGAAAGCCGCAACGCGGCAAGGCCGCGCGTGGAAGCGGTGAC GGCGGAGCTGGAAGAGACAAAGCTGAGCCTAAAAAAAGCCAAAGAGGAAGGCAACTTGATGTCCTACCGAATCAAGTCTTTACGAGAGGAGCTCGAGCTG ACCAAGAAGGAGCTTACCCAGATTAAAACACACCAAAAATACCAACACAAACACCACGCGCCACCACATCCAGCCGCTGACGACGACTCTGAGATCGAGG TGGAGGATCTCAAGTTCATCGAAACCTCGGCCAAGCTCAACAAACTGTTCGTCAGCCGGAAAGGAGTCGACAATGATGACGAGGACGACGATGATGAGCT GTCGGAGGAGTTTGATTGGAAGAAGAGGCCGTACGTGAAGTTCGCCAGCCCGCCTTCCTTGGCCAAAGTCATTGTGACCAGAGAAGAAATTATGATGCGG CCGCAGAGGTCGACGTCGACGCCTCATGTTGCTACGTCGTCGTCTTACGGGAAGAAGAGCCACCACCAGCCTGCGGCGGCGGCGGCGGTGAAGAGACGGT CGATGGTGCCGGTGTTGGGCTGGATGTTTAATAAGAAGAAGGGAGGCCCAGCCCACTCGGCAGATCATGTTGGTGGCAGTTATGGTCAACCGCAGCGATA CTGA
AA sequence Show only first row Show all	>Lus10028461 pacid=23166126 polypeptide=Lus10028461 locus=Lus10028461.g ID=Lus10028461.BGIv1.0 annot-version=v1.0 MQREKGHVVVMGRAEIDTRAPFSSVKEAVMLFGERVLAGEIYANKLKEIKEESESRNAARPRVEAVTAELEETKLSLKKAKEEGNLMSYRIKSLREELEL TKKELTQIKTHQKYQHKHHAPPHPAADDDSEIEVEDLKFIETSAKLNKLFVSRKGVDNDDEDDDDELSEEFDWKKRPYVKFASPPSLAKVIVTREEIMMR PQRSTSTPHVATSSSYGKKSHHQPAAAAAVKRRSMVPVLGWMFNKKKGGPAHSADHVGGSYGQPQRY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	0	1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	1.7	0.9878
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	3.5	0.9854
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	3.5	0.9815
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	3.9	0.9830
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10018005 [exp]	4.5	0.9811
AT5G66120			3-dehydroquinate synthase, put...		Lus10041882 [exp]	5.2	0.9739
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	6.3	0.9785
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10033672 [exp]	6.7	0.9774
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	6.9	0.9780
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	7.9	0.9799

Compare expression of checked genes

Lus10028461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.