Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17970 519 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G36090 483 / 2e-167 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT1G48980 380 / 8e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein AT2G48080 115 / 9e-28 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT1G14710 108 / 8e-25 hydroxyproline-rich glycoprotein family protein (.1.2) AT4G02940 100 / 2e-22 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041917 [exp] 887 / 0 AT2G17970 549 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028670 [exp] 261 / 2e-84 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10029637 [exp] 103 / 2e-23 AT4G02940 503 / 4e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10027990 [exp] 101 / 1e-22 AT4G02940 535 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10008166 [exp] 100 / 5e-22 AT4G02940 511 / 2e-177 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10042669 [exp] 99 / 6e-22 AT4G02940 498 / 5e-172 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10028671 [exp] 64 / 2e-10 AT4G36090 75 / 5e-14 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114800 [exp] 551 / 0 AT2G17970 504 / 1e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.007G012200 [exp] 518 / 0 AT2G17970 458 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.010G102100 [exp] 128 / 2e-31 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.008G138900 [exp] 125 / 2e-30 AT1G14710 423 / 6e-140 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.014G137700 [exp] 90 / 7e-19 AT4G02940 542 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10028462 pacid=23166035 polypeptide=Lus10028462 locus=Lus10028462.g ID=Lus10028462.BGIv1.0 annot-version=v1.0 ATGGCTCACAAGAACGGAACAAAAAACGACGACCCTTTCCTCCATCAATACCAGCCTGAGGATCTCCGAATCGCGTCGGAATTCCTCAACACCTGGCTCC CTTTTCTCTCCAAAGGTCTCTGCAACGGCTGCTCCCAATCTCTCTCCGATCGCATCCGTTCTCTCGACCCAAAATTCAATGGCTCGCCCGATCAGTCACG GTCTGAGAAATTCCCGGTCTCTTCAATTGTGGAATCTTGTGGGCACGTCGTGGAAAATCACAACGATGACGATTTTGATAAGAATTCGTTGGGTAGCTGG AATGATGGGGCTCATGGAAGTTCCGATTCAGTTCCCGGGGATACCGCTAGGGGATTGCTTGGTCCGCCGCCGGGAACTGAAACCTCGGGAAATCGGATGT CGTGGGCCGATATGGCGCAGCAAGAGGATGACGAGCTTGAGGATGAAGAAGATCACTTGCGTTCAAGCGTTGATAATACTCCTCTGGTAGCGAAGGCTGT GGGGAAGCCTCAGTTGTCGAGGGAGAAAAGAGAGTATCTCCGGTTTATGAATGTGCAGAGGAAGAAGGATTTCATTTGCTTCGAGAGGGTTTGTGGGAAA TTGGTAAACATCCTTGAAGGACTTGAACTTCACTCCGGTGTTTTCAGTGCGGCCGAGCAGAAGAGGATTGTGGATCACGTTTTCGAACTTAAAGAGAAAG GCATGAAAGGAGAATTGAAAGATCGCACATTAACAGCTCCTCAGAAGTGGATGAGAGGCAAAGGGAGGGTCACTCTGCAATTTGGATGCTGCTATAATTA TGCAACCGATAAGAATGGTAACCCACCTGGCATACTGAAAAATGAACTGGTGGATCCTATACCTCACCTTTTCAAAGTCATAATAAGAAGATTGGTAAAA TGGCATGTTCTGCCTCCCACCTGCGTACCAGACAGTTGTATTGTCAACATTTACGATGAAGGAGACTGCATACCACCCCATATCGACAACCATGATTTCC TCCGGCCATTCTGCACCGTATCTTTTGTTAGTGAGTGCAATATATTGTTCGGGACTAATTTAAAAATCGTTGGCCCTGGCGAGTTCTCTGGCTCCATGCC GATTCCTTTGCCAGTCGGCTCTGTGCTTGTACTAAATGGAAACGGAGCTGATGTGGCTAAACATTGCGTGCCGTCAGTCCCAACTAAAAGAATATCCATT ACGTTCAGAAAGATGGATGACACAAAGTGGCCTGCTGGGTTTGTTCCAGAGCCTGATCTGCAGGGACTTCAGCCATCAGAGTTTGAAGCAGACAAGGCAA TAACTCGGTCCAACTCCCCGAAATCTGAGCCGTACAAAAGAAGGCAGCCATTAGAGACAGAAGGTAATAAGATCGATTTCAGAAGAGCAGTCTCCTCAGA GACGCGAAATGCCAATCGAGGAAGGGGAAGGGGGAGGCTGGGTCCTCGACAGAAGGTGACGTTGGGTTCTGAGAATTGGTAA
AA sequence Show only first row Show all	>Lus10028462 pacid=23166035 polypeptide=Lus10028462 locus=Lus10028462.g ID=Lus10028462.BGIv1.0 annot-version=v1.0 MAHKNGTKNDDPFLHQYQPEDLRIASEFLNTWLPFLSKGLCNGCSQSLSDRIRSLDPKFNGSPDQSRSEKFPVSSIVESCGHVVENHNDDDFDKNSLGSW NDGAHGSSDSVPGDTARGLLGPPPGTETSGNRMSWADMAQQEDDELEDEEDHLRSSVDNTPLVAKAVGKPQLSREKREYLRFMNVQRKKDFICFERVCGK LVNILEGLELHSGVFSAAEQKRIVDHVFELKEKGMKGELKDRTLTAPQKWMRGKGRVTLQFGCCYNYATDKNGNPPGILKNELVDPIPHLFKVIIRRLVK WHVLPPTCVPDSCIVNIYDEGDCIPPHIDNHDFLRPFCTVSFVSECNILFGTNLKIVGPGEFSGSMPIPLPVGSVLVLNGNGADVAKHCVPSVPTKRISI TFRKMDDTKWPAGFVPEPDLQGLQPSEFEADKAITRSNSPKSEPYKRRQPLETEGNKIDFRRAVSSETRNANRGRGRGRLGPRQKVTLGSENW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10028462 [exp]	0	1
AT1G34220			Regulator of Vps4 activity in ...		Lus10028724 [exp]	1.0	0.8797
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	7.7	0.8490
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10015080 [exp]	7.9	0.8572
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031152 [exp]	8.5	0.8432
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	13.6	0.8113
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	16.2	0.8063
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040099 [exp]	17.0	0.8323
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031728 [exp]	19.4	0.8493
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	21.6	0.8032
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	22.0	0.8637

Compare expression of checked genes

Lus10028462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.