Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17990 311 / 1e-104 unknown protein AT5G66250 297 / 2e-99 kinectin-related (.1.2.3.4) AT4G36105 164 / 1e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041920 [exp] 586 / 0 AT2G17990 334 / 3e-114 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G115500 [exp] 415 / 2e-145 AT2G17990 385 / 6e-134 unknown protein Potri.007G012600 [exp] 404 / 3e-141 AT2G17990 380 / 6e-132 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028465 pacid=23166051 polypeptide=Lus10028465 locus=Lus10028465.g ID=Lus10028465.BGIv1.0 annot-version=v1.0 ATGGCTGCAGAAAATAGTGATCTTCCGAGTTTGAAATCTCAGCTGAGCGAAACTAACGAAACATGGATTCACGAAATGGAACGACAGCAACACCAAGTTA CTACTTTACAGGAAAAGCTCATGGAGATAACAGCTTCTATACAGGAATCTAAAGAAGGTGGGAAAAAAGAGTTGGATGTTCTTAGGCGAAGGGTGAAAAC CACAGCAACGTTATTGACTTACTTGAAATCAAAGGCAAGAGTAATGGCCCTTCCGGATTTAGCGCAGACGTCATACCCCGTCAAAAAATTAGAAGGCGTT GCGGATGAAGATACTTGTTCTAAACTCGAAACACGGCAAGACAGCCATGACCAGAATGACGAAGCTGCTTATATCAGGGAAATGCTCAAGTCCATACATG TGGTAGCGGATGGAAAGGGGGAAATGCTCAAGTCCATACATGTGGTAGCGGATGTAATGGAAACTCTAGTGAAAAGGGTTGTGCTTGCAGAATCGGAAAC TGCGATGGAGAAGGAGAAAGTATGCATAGGTCAGGAGGAAATTAGGAAGAAGGCAGTTCAAATTGAGAACATGTCGAGCAAACTAGAAAAAGTGGAAACT TTTGCAATGGGTACTAAAGCTATTCTGGACGATATGAAGCAGAGGATCGAGGATTTAGTGGATGAGATAACTCGGCAGACGCAGCGAGCTGAAGAAAACG AACAGGAGCTTTCTCGGGTGAAGAGGGACTTCGAGTCGTTGAAAGCTTATGTGAGCAGTCTGATGAATGTGAGGGAAACGCTTGTTTCGTCTGAGAAGCA ATTCCAGACCATGGAGAGGCTCTTTGAACGATTGGTGGCGAAAACAACGCAATTGGAAGGGGAGAAAATGCAGAAAGAGAGTGAAGTTCAGAAACTTATG GAAGAGAACGTGAAGTTAACTGCTCGACTGGACAAGAAAGAGGCTCAGCTGCTGGCAATGAATGAACAATGCAAGGCTTCTCAAATGTATAATTTGCCGA ATTTCTTCTTCGAAAACGCAATTGCGAGTTTAACCCCCAACTACGGTATCCCGGGTGGTTCGTCGACGATGCCTTCCTCTATCGCTTACCGTGTAACTTT GTGA
AA sequence Show only first row Show all	>Lus10028465 pacid=23166051 polypeptide=Lus10028465 locus=Lus10028465.g ID=Lus10028465.BGIv1.0 annot-version=v1.0 MAAENSDLPSLKSQLSETNETWIHEMERQQHQVTTLQEKLMEITASIQESKEGGKKELDVLRRRVKTTATLLTYLKSKARVMALPDLAQTSYPVKKLEGV ADEDTCSKLETRQDSHDQNDEAAYIREMLKSIHVVADGKGEMLKSIHVVADVMETLVKRVVLAESETAMEKEKVCIGQEEIRKKAVQIENMSSKLEKVET FAMGTKAILDDMKQRIEDLVDEITRQTQRAEENEQELSRVKRDFESLKAYVSSLMNVRETLVSSEKQFQTMERLFERLVAKTTQLEGEKMQKESEVQKLM EENVKLTARLDKKEAQLLAMNEQCKASQMYNLPNFFFENAIASLTPNYGIPGGSSTMPSSIAYRVTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17990			unknown protein		Lus10028465 [exp]	0	1
AT5G17380			Thiamine pyrophosphate depende...		Lus10028503 [exp]	3.9	0.8018
AT5G43060			Granulin repeat cysteine prote...		Lus10019827 [exp]	7.3	0.8108
AT3G07350			Protein of unknown function (D...		Lus10003174 [exp]	12.4	0.7921
					Lus10014377 [exp]	23.2	0.7884
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10011506 [exp]	33.5	0.7582
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10034454 [exp]	43.2	0.7759
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10011055 [exp]	55.2	0.7824
AT3G54680			proteophosphoglycan-related (....		Lus10017694 [exp]	83.5	0.7385
AT2G28370			Uncharacterised protein family...		Lus10021469 [exp]	93.1	0.7312
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10036919 [exp]	123.8	0.7152

Compare expression of checked genes

Lus10028465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.