Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18030 360 / 4e-127 Peptide methionine sulfoxide reductase family protein (.1.2) AT5G61640 102 / 2e-26 PMSR1, ATMSRA1 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) AT5G07460 100 / 1e-25 PMSR2, ATMSRA2 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, peptidemethionine sulfoxide reductase 2 (.1) AT4G25130 95 / 4e-23 PMSR4 peptide met sulfoxide reductase 4 (.1) AT5G07470 93 / 7e-23 PMSR3, ATMSRA3 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041922 [exp] 472 / 3e-171 AT2G18030 370 / 9e-131 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10033039 [exp] 100 / 6e-26 AT5G61640 256 / 6e-88 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Lus10032504 [exp] 102 / 9e-26 AT4G25130 348 / 6e-122 peptide met sulfoxide reductase 4 (.1) Lus10043002 [exp] 98 / 2e-24 AT4G25130 346 / 5e-121 peptide met sulfoxide reductase 4 (.1) Lus10013673 [exp] 67 / 2e-13 AT5G07470 185 / 4e-60 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G012900 [exp] 358 / 2e-126 AT2G18030 361 / 2e-127 Peptide methionine sulfoxide reductase family protein (.1.2) Potri.012G091100 [exp] 114 / 3e-31 AT5G61640 251 / 9e-86 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.015G087600 [exp] 109 / 3e-29 AT5G61640 261 / 8e-90 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.012G115800 [exp] 102 / 4e-26 AT4G25130 351 / 3e-123 peptide met sulfoxide reductase 4 (.1) Potri.015G112268 [exp] 96 / 1e-23 AT4G25130 351 / 4e-123 peptide met sulfoxide reductase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01625 [flax] [poplar] PMSR Peptide methionine sulfoxide reductase
Representative CDS sequence Show only first row Show all	>Lus10028467 pacid=23166038 polypeptide=Lus10028467 locus=Lus10028467.g ID=Lus10028467.BGIv1.0 annot-version=v1.0 ATGGCCTTCTCAGAGAGGAACGAGCCTCTCGCTCGCCTCCTTTTGTCGATTCTTCTATTAATGGTCTCCATTTCCAATCAAGCTTTCGGCATCCGCTTGC CGGAGAGGATCTCCACTACCGCGATCGAACAGCCAGATCAGCTTCTTAAATTGGCCGTCTTCGCACTCGGCAGCTTCTGGAGATCTGAAGCTGTCTTCGG CTGTTTGCACGGCGTCGTCCGGACTACAGTTGGATATTCCGGTGGATCCAAAGCCGTTCCAGAGTACCGTAGCTTAGCCGATCACGCTGAGTGCGTCCAG GTGGAATACGATCCCAGGGTGATCAATTACAGGCAACTTCTGGATGTTTTCTGGTCGAGCCACGATTCGAGGCAAGTGTTTGGGCAAGGGCCTGATGTTG GCAACCAATACAGATCTATTATCTTCAGTAATGGGACTGAGGAATCGAAGCTGGCTTCCGTTAGTAAAGAAAAGGAGCAGTTGAGGTCTAGAAGTAGCAT TGTCACTACCCAAATCCAACAACTTGCAACCTTCTACCCTGCTGTACCAGAGCATCAGAAATTCGAGCTCAAGAGAAACCCATTGCTTCTTCAGTTGATG GGCAACTTGCCTGAAGAGGAGCTGGAGAGGTCAAGCCTCGCTGCAAAACTAAACGGCTTTGCAGCAGAGCTCTGCCCTCCCAGGATTCAAGGACAGATTG ATGCAAGAATTAGTGAAATCGTGAAGAAAGGGTGGCCTGTTCTGAAGAATATTTAG
AA sequence Show only first row Show all	>Lus10028467 pacid=23166038 polypeptide=Lus10028467 locus=Lus10028467.g ID=Lus10028467.BGIv1.0 annot-version=v1.0 MAFSERNEPLARLLLSILLLMVSISNQAFGIRLPERISTTAIEQPDQLLKLAVFALGSFWRSEAVFGCLHGVVRTTVGYSGGSKAVPEYRSLADHAECVQ VEYDPRVINYRQLLDVFWSSHDSRQVFGQGPDVGNQYRSIIFSNGTEESKLASVSKEKEQLRSRSSIVTTQIQQLATFYPAVPEHQKFELKRNPLLLQLM GNLPEEELERSSLAAKLNGFAAELCPPRIQGQIDARISEIVKKGWPVLKNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18030			Peptide methionine sulfoxide r...		Lus10028467 [exp]	0	1
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	2.2	0.8696
AT1G12390			Cornichon family protein (.1)		Lus10028906 [exp]	2.4	0.8474
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013104 [exp]	4.9	0.8216
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10038577 [exp]	5.1	0.8526
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	8.5	0.8441
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	8.9	0.8222
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	16.3	0.8123
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10024418 [exp]	16.7	0.8044
AT1G69330			RING/U-box superfamily protein...		Lus10004666 [exp]	16.9	0.8020
AT2G40860			protein kinase family protein ...		Lus10002993 [exp]	17.3	0.7980

Compare expression of checked genes

Lus10028467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.