Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36130 488 / 3e-177 Ribosomal protein L2 family (.1) AT2G18020 479 / 5e-174 EMB2296 embryo defective 2296, Ribosomal protein L2 family (.1) AT3G51190 431 / 5e-155 Ribosomal protein L2 family (.1) ATCG01310 98 / 3e-24 ATCG01310.1, RPL2.2 ribosomal protein L2 (.1) ATCG00830 98 / 3e-24 ATCG00830.1, RPL2.1 ribosomal protein L2 (.1) AT2G44065 77 / 1e-16 Ribosomal protein L2 family (.1.2) AT4G14250 75 / 5e-15 structural constituent of ribosome (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025966 [exp] 506 / 0 AT4G36130 499 / 0.0 Ribosomal protein L2 family (.1) Lus10041923 [exp] 501 / 0 AT4G36130 502 / 0.0 Ribosomal protein L2 family (.1) Lus10001572 [exp] 84 / 2e-19 AT2G44065 238 / 8e-80 Ribosomal protein L2 family (.1.2) Lus10004973 [exp] 83 / 1e-17 AT1G07510 815 / 0.0 FTSH protease 10 (.1) Lus10001687 [exp] 72 / 6e-15 ATCG00830 281 / 3e-96 ribosomal protein L2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G115700 [exp] 503 / 0 AT4G36130 492 / 5e-179 Ribosomal protein L2 family (.1) Potri.007G013101 [exp] 495 / 4e-180 AT4G36130 493 / 3e-179 Ribosomal protein L2 family (.1) Potri.007G013000 [exp] 495 / 4e-180 AT4G36130 493 / 3e-179 Ribosomal protein L2 family (.1) Potri.017G007700 [exp] 79 / 1e-17 AT2G44065 200 / 3e-65 Ribosomal protein L2 family (.1.2) Potri.007G142200 [exp] 78 / 4e-17 AT2G44065 197 / 4e-64 Ribosomal protein L2 family (.1.2) Potri.013G137077 [exp] 73 / 6e-16 ATCG01310 243 / 2e-82 ribosomal protein L2 (.1) Potri.011G074401 [exp] 61 / 2e-10 ATCG01310 376 / 2e-131 ribosomal protein L2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00181 [flax] [poplar] Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain CL0107 [flax] [poplar] KOW PF03947 [flax] [poplar] Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028468 pacid=23166102 polypeptide=Lus10028468 locus=Lus10028468.g ID=Lus10028468.BGIv1.0 annot-version=v1.0 ATGGGAAGAGTCATCCGAGCTCAGCGTAAGGGTGCCGGTTCCGTCTTCAAGTCCCACACTCACCACCGCAAGGGACCGGCTCGCTTCCGCTCCCTCGACT TCGGCGAGAGGAACGGCTACCTCAAGGGCGTCATCACCGAGGTCATCCACGATCCCGGTAGGGGTGCGCCGCTCGTCAGGGTCAGCTTCCGCCACCCTTT CCGCTACCAGAAGCAGAAGGAGCTCTTCGTCGCCGCCGAGGGTATGTACACTGGCCAGTTCGTGTACTGCGGTAAGAAGGCCAATCTTATGGTCGGTAAC GTCTTGCCCCTCAGATCTATCCCCGAGGGAGGCGTTGTCTGCAACGTCGAGCACCACGTTGGTGATCGCGGTGCCTTCGCTAGGTGCTCTGGTGATTACG CCATCGTCATCAGTCACAACCCTGACAACGACACCACTAGGGTGAAGCTCCCATCTGGTGCAAAGAAGATTGTTCCAAGTGGATGCCGTGCTATGATTGG TCAAGTTGCAGGAGGAGGAAGGACTGAGAAGCCTATGCTGAAGGCTGGAAATGCGTACCACAAGTTCAGGGTTAAGAGGAACTGCTGGCCTAAGGTTCGT GGTGTCGCTATGAATCCAGTTGAGCATCCTCATGGTGGTGGTAACCATCAGCACATTGGTCACGCTAGTACCGTCAGGAGGGATGCACCCCCTGGGCAGA AGGTTGGTCTTATTGCTGCCAGGAGAACTGGTCGTCTCAGAGGTCAAGCTGCCGCATCTGCTGCCAAGACAGACAAGGCTTAG
AA sequence Show only first row Show all	>Lus10028468 pacid=23166102 polypeptide=Lus10028468 locus=Lus10028468.g ID=Lus10028468.BGIv1.0 annot-version=v1.0 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLVRVSFRHPFRYQKQKELFVAAEGMYTGQFVYCGKKANLMVGN VLPLRSIPEGGVVCNVEHHVGDRGAFARCSGDYAIVISHNPDNDTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVR GVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAASAAKTDKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	0	1
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	1.0	0.9773
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	1.4	0.9630
AT3G11250			Ribosomal protein L10 family p...		Lus10014841 [exp]	2.8	0.9514
AT3G11250			Ribosomal protein L10 family p...		Lus10009887 [exp]	3.0	0.9558
AT3G16080			Zinc-binding ribosomal protein...		Lus10035878 [exp]	3.0	0.9425
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017569 [exp]	4.0	0.9425
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	4.2	0.9466
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014014 [exp]	4.6	0.9429
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	6.7	0.9514
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10019745 [exp]	6.7	0.8754

Compare expression of checked genes

Lus10028468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.