Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38430 245 / 6e-84 Ribulose bisphosphate carboxylase (small chain) family protein (.1) AT5G38420 245 / 6e-84 Ribulose bisphosphate carboxylase (small chain) family protein (.1) AT5G38410 244 / 1e-83 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) AT1G67090 244 / 1e-83 RBCS1A ribulose bisphosphate carboxylase small chain 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009172 [exp] 336 / 8e-120 AT5G38420 264 / 2e-91 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10017597 [exp] 285 / 2e-99 AT5G38410 271 / 2e-94 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Lus10033558 [exp] 283 / 4e-99 AT5G38410 272 / 1e-94 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Lus10005093 [exp] 167 / 6e-53 AT5G38420 186 / 3e-60 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10034357 [exp] 163 / 2e-51 AT1G67090 182 / 7e-59 ribulose bisphosphate carboxylase small chain 1A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114600 [exp] 244 / 2e-83 AT1G67090 292 / 2e-102 ribulose bisphosphate carboxylase small chain 1A (.1.2) Potri.004G100000 [exp] 239 / 2e-81 AT1G67090 286 / 3e-100 ribulose bisphosphate carboxylase small chain 1A (.1.2) Potri.018G091401 [exp] 170 / 2e-54 AT5G38410 183 / 1e-59 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Potri.006G167901 [exp] 0 / 1 AT5G38410 0 / 1 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00101 [flax] [poplar] RuBisCO_small Ribulose bisphosphate carboxylase, small chain PF12338 [flax] [poplar] RbcS Ribulose-1,5-bisphosphate carboxylase small subunit
Representative CDS sequence Show only first row Show all	>Lus10028471 pacid=23166004 polypeptide=Lus10028471 locus=Lus10028471.g ID=Lus10028471.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTGATGTCTTCCTCCGGCGTCTCCACCGTCGGCAGAACCGCCGCAGTTCAGGCTAGCTTGGTCGCACCATTCAAGTCCTCCTCCTCCGCCT TCCCGGTCACCAAGAGGTCCTCCAACCGTTCTACCATCCCAAGCAACGGCAGCAGAGTCCAGTGCATGAAGGTGTGGCCACCAGTTGGGTTGAAGAAGTA CGAAACGCTGTCGTACCTTCCCCCATTGTCTGAGGAGTCTTTGGCTAAGGAGGTTGACTACCTACTCCGCATGGGATGGGTTCCTTGCTTGGAATTCGAG TTGGAGCACGGTTTCGTGTACCGTGAGCACAACAGCTCGCCGGGGTACTACGACGGGAGGTACTGGACAATGTGGAAGCTGCCCATGTTCGGGTGCACCG ACTCGTCGCAGGTGATGAAGGAGCTCCAGGAGTGCGTCAAGGAGTACCCGACCGCTTTCGTCCGTATCATCGGATTCGACAACAAGCGTCAAGTGCAGTG TATCAGTTTCATTGCCGCCAAGCCCCCGGGCTACTAA
AA sequence Show only first row Show all	>Lus10028471 pacid=23166004 polypeptide=Lus10028471 locus=Lus10028471.g ID=Lus10028471.BGIv1.0 annot-version=v1.0 MASLMSSSGVSTVGRTAAVQASLVAPFKSSSSAFPVTKRSSNRSTIPSNGSRVQCMKVWPPVGLKKYETLSYLPPLSEESLAKEVDYLLRMGWVPCLEFE LEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDSSQVMKELQECVKEYPTAFVRIIGFDNKRQVQCISFIAAKPPGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10028471 [exp]	0	1
AT1G11860			Glycine cleavage T-protein fam...		Lus10001624 [exp]	3.5	0.8987
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	4.2	0.9142
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	5.1	0.9193
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	8.9	0.8999
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Lus10022478 [exp]	10.8	0.8960
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	13.6	0.9018
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Lus10034016 [exp]	14.7	0.8861
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10033819 [exp]	15.2	0.8961
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	16.0	0.9011
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Lus10034503 [exp]	19.7	0.8756

Compare expression of checked genes

Lus10028471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.