Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57510 81 / 4e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009171 [exp] 207 / 7e-70 AT5G57510 88 / 6e-23 unknown protein Lus10033559 [exp] 132 / 3e-40 AT5G57510 84 / 1e-21 unknown protein Lus10017598 [exp] 125 / 3e-37 AT5G57510 80 / 6e-20 unknown protein Lus10026228 [exp] 59 / 1e-11 AT5G57510 62 / 6e-13 unknown protein Lus10042441 [exp] 54 / 1e-09 AT5G57510 64 / 9e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094100 [exp] 81 / 4e-20 AT5G57510 107 / 5e-31 unknown protein Potri.006G273566 [exp] 69 / 1e-15 AT5G57510 75 / 4e-18 unknown protein Potri.006G273500 [exp] 69 / 1e-15 AT5G57510 75 / 4e-18 unknown protein Potri.018G006800 [exp] 50 / 2e-08 AT5G57510 61 / 1e-12 unknown protein Potri.002G198800 [exp] 39 / 0.0005 AT5G38700 157 / 3e-49 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028472 pacid=23166095 polypeptide=Lus10028472 locus=Lus10028472.g ID=Lus10028472.BGIv1.0 annot-version=v1.0 ATGTCGAGCAACACATCTGAGCGGCGGTGGATTCTGTTTGGCCGGCTGAAGAAGGCGGTGAGCAAGTTGAGGATCCTGCTAAAGTTCGATCTCCACGTTT GGCGTTTGGCGGCGTCTCTCCTCGCCCCTTCTTCTCATGCCTCTGCTCCTTCAAGAGTAATTAGCTTCCGCGGCGAAGACAGGCCTGGATTGGCGGGGGT TGCGTGTGAGGATTACGATCCGCTACCTGATGGTGACTCGGATTCCGAATGGAATTCCCCTCCGGTTGAATTTACATCTCCTTCGGCGTCGAGATCGGAG CTCCGTAGAACTATTAGCCGCCGAGCGTCGATGGAAGATGACATCGACAAGAAGGCGGAGATGTTTATAGCTAATTTCCGGCGGCAGCTTCGGATTGAGC GGCAGATCTCTCTGGATCTCAAGTATTGCCAGCAGAAGACGTGA
AA sequence Show only first row Show all	>Lus10028472 pacid=23166095 polypeptide=Lus10028472 locus=Lus10028472.g ID=Lus10028472.BGIv1.0 annot-version=v1.0 MSSNTSERRWILFGRLKKAVSKLRILLKFDLHVWRLAASLLAPSSHASAPSRVISFRGEDRPGLAGVACEDYDPLPDGDSDSEWNSPPVEFTSPSASRSE LRRTISRRASMEDDIDKKAEMFIANFRRQLRIERQISLDLKYCQQKT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57510			unknown protein		Lus10028472 [exp]	0	1
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	1.4	0.9835
AT2G47485			unknown protein		Lus10033571 [exp]	3.2	0.9778
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	3.9	0.9801
AT5G36930			Disease resistance protein (TI...		Lus10014671 [exp]	4.2	0.9729
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	4.5	0.9812
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10028679 [exp]	5.7	0.9673
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	6.3	0.9792
AT3G50910			unknown protein		Lus10028325 [exp]	7.5	0.9684
AT2G31945			unknown protein		Lus10013740 [exp]	8.1	0.9623
AT2G14095			unknown protein		Lus10001300 [exp]	8.4	0.9717

Compare expression of checked genes

Lus10028472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.