Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 102 / 5e-26 MADS AGL62 AGAMOUS-like 62 (.1) AT1G29962 95 / 3e-24 MADS AGL64 AGAMOUS-like 64 (.1) AT4G36590 96 / 6e-24 MADS MADS-box transcription factor family protein (.1) AT2G24840 94 / 4e-23 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT1G28460 89 / 5e-22 MADS AGL59 AGAMOUS-like 59 (.1) AT1G65360 89 / 2e-21 MADS AGL23 AGAMOUS-like 23 (.1) AT1G01530 88 / 4e-21 MADS AGL28 AGAMOUS-like 28 (.1) AT1G28450 85 / 2e-20 MADS AGL58 AGAMOUS-like 58 (.1) AT3G66656 79 / 4e-18 MADS AGL91 AGAMOUS-like 91 (.1) AT3G04100 76 / 6e-17 MADS AGL57 AGAMOUS-like 57 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028490 [exp] 342 / 1e-119 AT4G36590 108 / 3e-28 MADS-box transcription factor family protein (.1) Lus10025872 [exp] 209 / 3e-67 AT5G60440 107 / 8e-27 AGAMOUS-like 62 (.1) Lus10020511 [exp] 87 / 1e-20 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10012449 [exp] 87 / 2e-20 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10015271 [exp] 83 / 2e-19 AT2G24840 114 / 6e-31 DIANA, AGAMOUS-like 61 (.1) Lus10016563 [exp] 80 / 2e-18 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1) Lus10030824 [exp] 79 / 3e-18 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10040832 [exp] 78 / 2e-17 AT2G34440 135 / 1e-40 AGAMOUS-like 29 (.1) Lus10011787 [exp] 77 / 2e-17 AT2G34440 133 / 1e-39 AGAMOUS-like 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130900 [exp] 124 / 2e-35 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.009G045900 [exp] 122 / 2e-34 AT3G04100 121 / 2e-34 AGAMOUS-like 57 (.1) Potri.001G251400 [exp] 120 / 9e-34 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 110 / 1e-29 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.009G046100 [exp] 107 / 2e-29 AT5G60440 115 / 6e-32 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 108 / 5e-29 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 96 / 3e-24 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.004G131100 [exp] 88 / 2e-21 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1) Potri.009G084100 [exp] 86 / 2e-20 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.017G040700 [exp] 81 / 1e-18 AT5G60440 122 / 5e-34 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10028473 pacid=23166130 polypeptide=Lus10028473 locus=Lus10028473.g ID=Lus10028473.BGIv1.0 annot-version=v1.0 ATGGAATTTCCGACCGTCAACATCTACGACGACGTAAGCAGCAGTAGCGAGGACAATATCGACATCACCAACATCCATCCGGTTCCCAAGAAAACCAGAG GAAGGCGAAAGATCCAAATGAAGAAGATCAAGAAAGATACGGATATGATGGTAACCTTCTCGAAACGTAGGTTTGGGATCTACAAGAAGGCTAGCGAGCT TGTCACCTTGACAGGCAGTGAGATTGCCTTTTTGGTCTATTCCCCTGCCGGCAATGCCTTCACCTTTGCTCATCCTTCCTTTGACTTCCTAGTCACCAAG TATTTGGGCATACAACACCTTGATCCGTCGATCATATCTTATGAAACCATTTATGTGCTGCAGCAGGACAGGATCAACGAGTTGACCGTCAGGTACACCA ACTCCCTTAAGAATTTGGAAAACGAGCAAAGGAAGGAGAAGGATTTGTCGGCTAGGTGTCATGGGAAGTCCTTGAACAACTGGTGGAACATCGGCTTCAA AAAAGACATGATTCATCTGCATCGAGCACGTCCCGCACTCCCAAAGAACCACACATGCTTGTCTTGTAGGTTACTCCTCGTCGGCAAAACTTCGCGGCCA GCTCCCACAGTGTCGTCCACTCTCCAGCCACCTTCAAATCCTCCATATCAACATTACGATCCGGGAGACTCCTAA
AA sequence Show only first row Show all	>Lus10028473 pacid=23166130 polypeptide=Lus10028473 locus=Lus10028473.g ID=Lus10028473.BGIv1.0 annot-version=v1.0 MEFPTVNIYDDVSSSSEDNIDITNIHPVPKKTRGRRKIQMKKIKKDTDMMVTFSKRRFGIYKKASELVTLTGSEIAFLVYSPAGNAFTFAHPSFDFLVTK YLGIQHLDPSIISYETIYVLQQDRINELTVRYTNSLKNLENEQRKEKDLSARCHGKSLNNWWNIGFKKDMIHLHRARPALPKNHTCLSCRLLLVGKTSRP APTVSSTLQPPSNPPYQHYDPGDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10028473 [exp]	0	1
AT4G36590	MADS		MADS-box transcription factor ...		Lus10028490 [exp]	1.0	0.9309
AT1G62935			unknown protein		Lus10009297 [exp]	4.5	0.9020
					Lus10006897 [exp]	6.3	0.8279
					Lus10008321 [exp]	6.3	0.8683
					Lus10002237 [exp]	6.5	0.8734
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	8.7	0.8720
AT5G20550			2-oxoglutarate (2OG) and Fe(II...		Lus10016145 [exp]	8.9	0.8350
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	9.2	0.8605
AT3G18150			RNI-like superfamily protein (...		Lus10029586 [exp]	14.7	0.7316
AT2G05920			Subtilase family protein (.1)		Lus10006689 [exp]	20.1	0.8479

Compare expression of checked genes

Lus10028473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.