Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16120 337 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G77420 253 / 4e-83 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 207 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 203 / 4e-64 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 201 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 199 / 8e-63 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 192 / 3e-60 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 191 / 1e-59 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 189 / 7e-59 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 170 / 1e-51 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009169 [exp] 417 / 2e-148 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017601 [exp] 361 / 3e-126 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 284 / 3e-96 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 285 / 3e-95 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041441 [exp] 258 / 4e-85 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10034331 [exp] 257 / 1e-84 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 200 / 1e-62 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10030366 [exp] 197 / 4e-62 AT3G62860 400 / 2e-140 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 191 / 9e-60 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114800 [exp] 352 / 3e-122 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G124000 [exp] 275 / 2e-91 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 196 / 2e-61 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 195 / 7e-61 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 193 / 1e-60 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 189 / 6e-59 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 187 / 3e-58 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 150 / 1e-43 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 147 / 1e-42 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 135 / 3e-38 AT1G52760 560 / 0.0 lysophospholipase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10028475 pacid=23166142 polypeptide=Lus10028475 locus=Lus10028475.g ID=Lus10028475.BGIv1.0 annot-version=v1.0 ATGGATTACCCTGGTTTTGTCCTCTCGGAAGGCCTTCACGGTTATATCCCAAGCTTCGATAGCCTTGTTGATGATGTTATCGAGCACTATGATAAGGTCA AAGGGGGTCCTGATTTTCAAAACCTTCCGAGCTTCCTGTTCGGACAGTCAATGGGTGGAGCTGTAGTCCTCAAGCTTCACCTGAAACAGCCAGACGCATG GACTGGTGCCATTCTTGTTGCACCCATGTGCAAAATTGCAGACGATATGGTTCCACCATGGGCTGTGAAGCAATTCCTCATCGGGATAGCCAATTTCCTT CTGAAGCACAAGTTAGTACCACAGAAGGACTTGGCCGAAGCAGCATTCAGAGATTTGAAGAAGAGAGAAATGGTGAAGTCTTGTTCCATCCAAGTTGCAA TCTTTCTCCGGATCTCTGGCAGCATACAATGTCATTGCTTACAAGCACAAGCCAGGATAAGGACTGCCTTGGAGATGCTTAAAACCACCCAAGAGATCGA ACAACGGCTGGAAGAAGTATCTTTGCCGCTGTTGATTCTGCACGGAGAGGCTGATATTGTGACAGACCCATCAGTGAGCAAGGAATTGCATGAGAAAGCA AAGAGTTCAGACAAGAACCTGAAGCTGTACAAAGATGCTTACCATTCTCTAATGGAGGGTGAGCCTGATGAAACCATAATTCAAGTACTCAACGACATAA TCAGTTGGTTGGACCAGCACTGCAAATGA
AA sequence Show only first row Show all	>Lus10028475 pacid=23166142 polypeptide=Lus10028475 locus=Lus10028475.g ID=Lus10028475.BGIv1.0 annot-version=v1.0 MDYPGFVLSEGLHGYIPSFDSLVDDVIEHYDKVKGGPDFQNLPSFLFGQSMGGAVVLKLHLKQPDAWTGAILVAPMCKIADDMVPPWAVKQFLIGIANFL LKHKLVPQKDLAEAAFRDLKKREMVKSCSIQVAIFLRISGSIQCHCLQAQARIRTALEMLKTTQEIEQRLEEVSLPLLILHGEADIVTDPSVSKELHEKA KSSDKNLKLYKDAYHSLMEGEPDETIIQVLNDIISWLDQHCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	0	1
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	2.4	0.8959
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	4.0	0.8803
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	4.0	0.8856
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	6.2	0.8847
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	6.3	0.8786
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012980 [exp]	7.0	0.8758
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012981 [exp]	8.9	0.8757
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10024613 [exp]	9.2	0.8292
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10023523 [exp]	10.4	0.8515
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10010942 [exp]	11.0	0.8574

Compare expression of checked genes

Lus10028475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.