Plant FIBer expression Database

Lus10028476 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67080 248 / 1e-83 ABA4 abscisic acid (aba)-deficient 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009168
[exp]
429 / 8e-155 AT1G67080 253 / 1e-85 abscisic acid (aba)-deficient 4 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G099500
[exp]
276 / 2e-94 AT1G67080 248 / 2e-83 abscisic acid (aba)-deficient 4 (.1)
Potri.017G114900
[exp]
246 / 9e-83 AT1G67080 216 / 8e-71 abscisic acid (aba)-deficient 4 (.1)
PFAM info
Representative CDS sequence
>Lus10028476 pacid=23166015 polypeptide=Lus10028476 locus=Lus10028476.g ID=Lus10028476.BGIv1.0 annot-version=v1.0
ATGGCAGCATTCTCCCTTCCTCCTCCTCCTTCCCCGCTCAAGATTGATTATCCAAGGCAGGCTGCAAGTTCTATAAAGGCATTTCACAGAGCTCACAGAC
TTCCATCTTCGCTAAGGAGTAAAGGCACTGACTTATGCAGGGAATGGAGTGTTTTGGGAGGTTCAACAATCTTTAATCAACCAAAACCAGTCAAGCTCTT
TGCTCGTCAGAAAAGCTCAACCACAATTTATGCCTCATGGTGGACAAGCCCTCAAGTTGCAAACCATGTGTTCACTTTTGGAACGGCAGCTGTTCTGCCA
TTTTACACCCTCATGGTTGTAGCCCCAAAATCGCAACTGACGAGAAAGTCGGTAGAAAGTAGCATACCTTACATAGTGCTGGGGCTTTTGTATGCATATC
TACTATGCCAGTCATGGACACCTGAACATTTCCAGCTAATGTTCGCCAGTAAATACTGGCTACCCGAGCTGCCAGGAATAGCAAAGATGTTCTCGAGCGA
GATAACATTAGCTTCCGCATGGATTCACCTTCTTACAGTAGATCTCTTTGCGGCCAGGCAGGTGTATAATGATGGGTTGGAGAATGGGATAGAGACTCGG
CATTCGATATCTCTTTGCCTGCTGTTCTGTCCTGTGGGAATTGTCGCTCACTTCTTCACTAAAGTGCTAACCAAAGGTGCAGCAAAGTAG
AA sequence
>Lus10028476 pacid=23166015 polypeptide=Lus10028476 locus=Lus10028476.g ID=Lus10028476.BGIv1.0 annot-version=v1.0
MAAFSLPPPPSPLKIDYPRQAASSIKAFHRAHRLPSSLRSKGTDLCREWSVLGGSTIFNQPKPVKLFARQKSSTTIYASWWTSPQVANHVFTFGTAAVLP
FYTLMVVAPKSQLTRKSVESSIPYIVLGLLYAYLLCQSWTPEHFQLMFASKYWLPELPGIAKMFSSEITLASAWIHLLTVDLFAARQVYNDGLENGIETR
HSISLCLLFCPVGIVAHFFTKVLTKGAAK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67080 ABA4 abscisic acid (aba)-deficient ... Lus10028476
[exp]
0 1
AT1G56310 Polynucleotidyl transferase, r... Lus10031404
[exp]
1.4 0.8289
AT5G17620 unknown protein Lus10001340
[exp]
2.4 0.8391
AT1G03180 unknown protein Lus10000654
[exp]
4.6 0.8215
AT1G64355 unknown protein Lus10023098
[exp]
5.9 0.8146
Lus10029781
[exp]
7.7 0.7781
AT1G03590 Protein phosphatase 2C family ... Lus10031631
[exp]
8.7 0.8166
AT1G08780 PFD4, PDF4, AIP... PREFOLDIN 4, ABI3-interacting ... Lus10042533
[exp]
14.2 0.8060
Lus10029224
[exp]
16.9 0.7359
AT4G36850 PQ-loop repeat family protein ... Lus10022491
[exp]
19.1 0.7451
AT5G17620 unknown protein Lus10013643
[exp]
19.6 0.7956

Lus10028476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.