Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38380 347 / 6e-120 unknown protein AT2G04620 51 / 5e-07 Cation efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009167 [exp] 358 / 2e-124 AT5G38380 374 / 2e-129 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115200 [exp] 389 / 2e-136 AT5G38380 556 / 0.0 unknown protein Potri.005G110300 [exp] 52 / 2e-07 AT2G04620 483 / 2e-158 Cation efflux family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028477 pacid=23166121 polypeptide=Lus10028477 locus=Lus10028477.g ID=Lus10028477.BGIv1.0 annot-version=v1.0 ATGCAAAAGCCTTGGAAGGGAAGGTCTCTCTCTAATCAACAGGTAGTGCCTTCTATCATCAATGGCGTCATAACAGCTTTGTATTTTAGTATGTGGGGAA AAGGACTCAAGTCATGTGGGCCAGTACGAATTTACGTGGTGGCCAAGTCTAAACAAATTTTCATTTTGGATTTTAGGACCATCTTGGCAGAATATGCAGG TGCTGTTCTTGGTGTTTTATCAGCAGTATTATATGGGAGGGGAAGCCATGTATTGAAAAAGAAAGTTTCTAATACGGAATCCCCTCCAGAAGGAGTATTG GCTATGAAAGACATGGTCGTTCCAATTATTGCCGGAATCTTATCAGCTTTAAGAAGGGTGATTGCACGGCGTGTTTCACTCAAGAATCAACTGAAAAGAA GGCTGCATGCTATAACAATCACCTCGGCTACATGTTTTCTTTTTCCTGTGGCTATGTGGGACTTCATCACGGGAGATGATAGCAAAATACAACTTCCGTT TTCTGCTTGGACATTTGGGAGCTTTATTATCTTTGGAGTTATCTTGATATTCTACATTGACAGCATAGCAGAAGAAAGGCTGCATATGGTTTTCTCTTCT CCAAGACACTTAATGGTGGCCGGAGGCTGTATCATCGTTCTAGAGACCCTATATAAGATGGACTTCTCTCTGCCAGGATTCATCATTTGCTGCTTAATTT TGGGTTTTGGGATCTACGAGGCAACTGCTTTGGAACGTGGGAAGAAGGGTACTACTCAACACTTCGATCCAGCTGATGAAATATTGGAGGATGAGATGCA CAAGTCGCCGCTTCCTACTTGA
AA sequence Show only first row Show all	>Lus10028477 pacid=23166121 polypeptide=Lus10028477 locus=Lus10028477.g ID=Lus10028477.BGIv1.0 annot-version=v1.0 MQKPWKGRSLSNQQVVPSIINGVITALYFSMWGKGLKSCGPVRIYVVAKSKQIFILDFRTILAEYAGAVLGVLSAVLYGRGSHVLKKKVSNTESPPEGVL AMKDMVVPIIAGILSALRRVIARRVSLKNQLKRRLHAITITSATCFLFPVAMWDFITGDDSKIQLPFSAWTFGSFIIFGVILIFYIDSIAEERLHMVFSS PRHLMVAGGCIIVLETLYKMDFSLPGFIICCLILGFGIYEATALERGKKGTTQHFDPADEILEDEMHKSPLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38380			unknown protein		Lus10028477 [exp]	0	1
AT4G31460			Ribosomal L28 family (.1)		Lus10013249 [exp]	9.8	0.8512
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	18.4	0.8486
AT1G03970	bZIP	GBF4	G-box binding factor 4 (.1)		Lus10042810 [exp]	21.0	0.8127
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	25.2	0.8455
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	33.8	0.8321
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	34.4	0.8433
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10000908 [exp]	38.0	0.8416
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	42.9	0.8391
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10038824 [exp]	44.5	0.8142
					Lus10005391 [exp]	46.3	0.8060

Compare expression of checked genes

Lus10028477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.