Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38360 298 / 4e-101 alpha/beta-Hydrolases superfamily protein (.1) AT4G09900 50 / 1e-06 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT3G29770 47 / 9e-06 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT1G69240 46 / 2e-05 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT4G16690 45 / 2e-05 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT1G73480 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1) AT1G26360 45 / 6e-05 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT1G33990 45 / 6e-05 ATMES14 methyl esterase 14 (.1) AT2G23620 44 / 6e-05 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT4G02340 44 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009166 [exp] 643 / 0 AT5G38360 299 / 1e-101 alpha/beta-Hydrolases superfamily protein (.1) Lus10013193 [exp] 52 / 5e-07 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10020663 [exp] 49 / 3e-06 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10023326 [exp] 48 / 5e-06 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10030707 [exp] 48 / 8e-06 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10003969 [exp] 47 / 2e-05 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10029878 [exp] 46 / 2e-05 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 45 / 3e-05 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037068 [exp] 45 / 4e-05 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099300 [exp] 517 / 0 AT5G38360 316 / 2e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G115350 [exp] 54 / 7e-09 AT5G38360 0 / 1 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 52 / 3e-07 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G096900 [exp] 51 / 5e-07 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.004G116500 [exp] 50 / 1e-06 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.014G127200 [exp] 47 / 8e-06 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G104700 [exp] 46 / 2e-05 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.002G202700 [exp] 46 / 2e-05 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G131100 [exp] 45 / 3e-05 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.009G107500 [exp] 43 / 0.0002 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10028478 pacid=23166013 polypeptide=Lus10028478 locus=Lus10028478.g ID=Lus10028478.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTTCGCTGGTTGCTCTCTTTCAGCCAAACTTCATCTTGCCCCGCCCAACACGACTGTCACGACACACCAGGAGGACAAATGCTATCCTTA GCAGCAAAACCCACCAACAAATGCGGGTTCATTACGAATTGAAGCAAGGACAGAGCCGGGTTTTCCACCAGCTTCCTTCCGGACTCAACTTGGAGGTGAT TGAGCACAAAAGAAACCTCGCAACAGCTGAAAGCCAAAAGAAGCCACCTTTGGTTTTCGTTCACGGAAGCTATCACGCAGCCTGGTGTTGGGCTGAGCAT TGGTTGTCCTTCTTTTCGGCATCTGGCTTTGATTGCTATGCCATTAGCCTGTTGGGTCAGGGCGAAAGTGATGCACCTAGTGGATCTGTTGCTGGTACAC TACAGACACATGCTGGTGATGTTGCGGACTTCATCCAGAAAACGATCAACTTGCCACCCGTGTTGCTTGGACATTCATTTGGTGGCCTAATCGTTCAGTA CTACCTTGCAAATGCAACATCTTTAGAAACAAAACAGCTCTATCCTCATCTTGCCGGGGCTGCGCTAATTTGCTCTGTACCGCCTTCCGGTAATAGTGGC TTGGTATGGCGGTATCTATTTACCAAACCGGTCGCTGCTTTCAAGGTGACCCGCAGTTTAGCAGCTAAAGCCTTTCAAACTGATCTTGCTCTTTGCAAGG AAACATTTTTCACATCAACGATGGAGGATCATGTAGTGAAACGTTACCAAGATTTGATGAAAGAAAGTTCACGGATGCCACTGTTTGATTTAAGGAAGCT AAACGCGTCACTCCCGGTTCCTTCAATCCCAAAGTCCTCTGCAAATGTCCTTGTGTTGGGTGCTAGTGACGACTTCATAGTGGATGCTCAAGGACTGAAG GAAACAGCAAGCTTCTATGGCGTGTCTCCTGTCTGCGTTGAAAGCGTTGCCCACGATATGATGTTGGATTGTGAGTGGGAAAAGGGGGCTAGAGTGGTTC TTTCCTGGTTGAAAGCTTTAAACTGA
AA sequence Show only first row Show all	>Lus10028478 pacid=23166013 polypeptide=Lus10028478 locus=Lus10028478.g ID=Lus10028478.BGIv1.0 annot-version=v1.0 MAAASLVALFQPNFILPRPTRLSRHTRRTNAILSSKTHQQMRVHYELKQGQSRVFHQLPSGLNLEVIEHKRNLATAESQKKPPLVFVHGSYHAAWCWAEH WLSFFSASGFDCYAISLLGQGESDAPSGSVAGTLQTHAGDVADFIQKTINLPPVLLGHSFGGLIVQYYLANATSLETKQLYPHLAGAALICSVPPSGNSG LVWRYLFTKPVAAFKVTRSLAAKAFQTDLALCKETFFTSTMEDHVVKRYQDLMKESSRMPLFDLRKLNASLPVPSIPKSSANVLVLGASDDFIVDAQGLK ETASFYGVSPVCVESVAHDMMLDCEWEKGARVVLSWLKALN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10028478 [exp]	0	1
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10042564 [exp]	1.4	0.8498
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	2.8	0.8542
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10028945 [exp]	3.7	0.8110
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	11.7	0.8357
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10027929 [exp]	14.0	0.8114
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	14.0	0.8102
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	14.4	0.7997
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	15.9	0.8386
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10003741 [exp]	24.0	0.8090
AT1G14810			semialdehyde dehydrogenase fam...		Lus10030759 [exp]	24.3	0.8238

Compare expression of checked genes

Lus10028478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.