Plant FIBer expression Database

Lus10028480 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67070 539 / 0 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
AT3G02570 531 / 0 PMI1, MEE31 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009165
[exp]
887 / 0 AT1G67070 540 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Lus10033563
[exp]
720 / 0 AT1G67070 534 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Lus10017603
[exp]
633 / 0 AT3G02570 462 / 7e-162 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Lus10015062
[exp]
565 / 0 AT1G67070 505 / 1e-178 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G115500
[exp]
627 / 0 AT3G02570 560 / 0.0 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Potri.004G099100
[exp]
624 / 0 AT1G67070 573 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF01238 PMI_typeI Phosphomannose isomerase type I
Representative CDS sequence
>Lus10028480 pacid=23166019 polypeptide=Lus10028480 locus=Lus10028480.g ID=Lus10028480.BGIv1.0 annot-version=v1.0
ATGGACTTTTCTAAGTACCGCCGCCTCCGCCGACTCAGATGCTCCGTCCAGCACTACGATTGGGGTAAAATGGGGAAGGATTCGCTCGTCGGAAGGGTCT
GCGCTTTCAATTCCGGTTCCCAGATCCAAATCAACAGGCCGTACGCCGAGTTCTGGATGGGGATCCATGACTCGGGTCCGTCTTTCGTCCTCGACACTGG
GGTAATTGGGAATAATGGCAACGCAATTGACTCCCACTCGCTCAGTTTGAAGGACTGGATTGCTCAGAACCCTTCCGTGGTCGGTGATAAGGTTTTCGAT
AAGTGGGGTTCTGATCTCCCCTTCTTGTTCAAGATACTCTCTGTGGGCAAAGCACTGTCAATTCAGGCGCACCCGGATAAAGAATTGGCAAAGAAGCTCC
ATAAGCTGCACCCAAGCATTTACAAAGATGGCAGTGACAAGCCTGAAATGGCTTTGGCCATTACAGAGTTTGAGGCCCTTTGCAGTTTCGTCTCTTTTGA
GGAGCTTAAGGATATTCTTCGTAATATTCCAGAGGTTGTAGAACTGATTGATAGTAAAGATGCTAGCCAACTGTTGCAAATCAATGACCAAGTGGAGAGC
GAAAAGCTGAAATCATTATTGAAATGTATTTTCACCCAGTTGATGTCAGCCAGCAAAGAGATGACAACTAGAGCAGTGTCCAAGTTGAAAACCAGACTGC
AGAGGCAGAGCCAGGTGAGGAAGTTGACTGATAAAGAAAACCTCGTCTTGAAATTGGAGAAGGAATATCCAGATGATATTGGTGTTATATCAGCCTTCTT
TCTAAACCATGTTAAGCTTAATCCTGGTGAAGCTTTGTATCTTGGGGCAAATGAACCACACGCATATATCTCTGGTGAGTGCGTTGAAGTCATGGTAACA
TCTGACAACGTCATTCGGGCTGGCCTTACTCCCAAGCATCGGGATGTCCAAACACTTTGCTCTATGCTCACCTACAAACAGGGATTTCCAGAAATCCTGA
AAGGGTTCCCCCTCACTCCATACATAACAAGGTACCTCCCACCATTTGACGAATTTGAGATGGACCGATGTTTCCTTCCGAAAGGTGCATCCACAGTGTT
TCCAGCAGTTCAGGGTCCGTCCATTTTCGTGATCACGGCTGGGGAGGGAGTAATGCAGGCAGGATCATCGTCTTTCATAGATGTAGTGGTTGAAGGGGAT
GTGTTATTTGCTCCTGCAGGTATCCAGATCATCGTGAAGACTGTATCCGAGTTGCATATGTATAGAGCTGGAGTAAATAGCAGATTCCTCCAAACCCTGT
GA
AA sequence
>Lus10028480 pacid=23166019 polypeptide=Lus10028480 locus=Lus10028480.g ID=Lus10028480.BGIv1.0 annot-version=v1.0
MDFSKYRRLRRLRCSVQHYDWGKMGKDSLVGRVCAFNSGSQIQINRPYAEFWMGIHDSGPSFVLDTGVIGNNGNAIDSHSLSLKDWIAQNPSVVGDKVFD
KWGSDLPFLFKILSVGKALSIQAHPDKELAKKLHKLHPSIYKDGSDKPEMALAITEFEALCSFVSFEELKDILRNIPEVVELIDSKDASQLLQINDQVES
EKLKSLLKCIFTQLMSASKEMTTRAVSKLKTRLQRQSQVRKLTDKENLVLKLEKEYPDDIGVISAFFLNHVKLNPGEALYLGANEPHAYISGECVEVMVT
SDNVIRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLTPYITRYLPPFDEFEMDRCFLPKGASTVFPAVQGPSIFVITAGEGVMQAGSSSFIDVVVEGD
VLFAPAGIQIIVKTVSELHMYRAGVNSRFLQTL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67070 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DA... Lus10028480
[exp]
0 1
AT2G37740 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) Lus10000705
[exp]
1.4 0.9290
AT4G37250 Leucine-rich repeat protein ki... Lus10010263
[exp]
2.8 0.8947
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Lus10040694
[exp]
3.2 0.8960
AT1G78020 Protein of unknown function (D... Lus10019672
[exp]
4.0 0.8645
AT5G67130 PLC-like phosphodiesterases su... Lus10009368
[exp]
4.5 0.8946
AT4G25300 2-oxoglutarate (2OG) and Fe(II... Lus10004581
[exp]
8.8 0.8958
AT2G20680 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl ... Lus10018598
[exp]
8.9 0.8844
Lus10003411
[exp]
8.9 0.8818
AT3G08510 ATPLC2 phospholipase C 2 (.1.2.3) Lus10028287
[exp]
9.0 0.8535
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Lus10018211
[exp]
10.2 0.8659

Lus10028480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.