Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18410 322 / 2e-108 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009164 [exp] 625 / 0 AT2G18410 364 / 3e-123 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099000 [exp] 429 / 3e-150 AT2G18410 369 / 1e-126 unknown protein Potri.017G115566 [exp] 220 / 1e-70 AT2G18410 156 / 8e-47 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF10483 [flax] [poplar] Elong_Iki1 Elongator subunit Iki1
Representative CDS sequence Show only first row Show all	>Lus10028481 pacid=23165990 polypeptide=Lus10028481 locus=Lus10028481.g ID=Lus10028481.BGIv1.0 annot-version=v1.0 ATGGCGGATTCAATATGCAGGACGCTACGAGACGGTGCTTTGGAAGGAGAGCACGCGCCGTCTCTTACCATCAAAGACACAACAGCTTCACCCTACGGAT TCGATGTTTTCACTCACGTCCTCTCCCAGCTCTCCTCTCTCATTTTAGCGGGAAAATCACAGTCACGAGGCTTAGTCTTGGTTTCCTATTCGCGATCTCC ATCTTTCTACCTTGATTTGTTGAGTAGAAGAGGAGTTGATGTTGCCTCTTCTAAGAATTGGATATATATTGTAGACTGTTACACGGATCCTCTTGGTTGG AAACTTCAGCTTGTAAAGTCTGGGGTTGTCGAGGATATTTCGTCTGCCAATTCGTCAGCTGGCACTTCCATTCTACAGGATGTGAAGGATGTTGAGAAGT TGTATTCTTTGATTCTTGACTCCGGTGCAGGATTGGTTGGGCAAGGCAAGGTTCGATTTTCTGTTGCGATTGATTCGGTAACTGAAATGCGTAGGCATGT ACCTGTTTCCAAAATAGGATGGCTTATAAGCGACCTTCGTAGTCATGATATCCATGAAATTAAGCTTACTACTTCCCTCGAATATCTGTCCTCTATGGTG GCTAGCGTCGAACCAGTTAACCAGTCTCATGATAGCCATGTAAGAGACTTGGGAAGTCTATCTCTAGTGGATAATTCTTTTGGGAAAGGAAAGCTTCATA CACGGTTCAAGCGCCGAAATGGCCGTGTACGCATAATGAACGAAGAATTCCATATGGAGGAGTCAGGGATGAAATTTACTTCGGTTTCGGGGGAAGATGG ATTAGTCAGTCAAGGGCTCGTGCCGAAGGTGCAATTCAATCTGGAGTTGTCAGAGAAGGAAAAAATGGAGAGGGCCAAAGTTATCCTTCCCTTTGAGCAC CAAGGAACAGGGAAACCGATCCAAATATACGATGGTCGGAAATCTTTTGCACCGGGGGGCATAACTGAAGCAATAGCTGGAGGGGATTCACAAAACAAGC CAGAAGAAAGCAGTGGTGGAGGCGGCGAGATAATATACTTTCGGGATTCTGATGATGAGAGGCCGGATTCTGACGAGGACCCAGATGATGATCTTGATAT CTAA
AA sequence Show only first row Show all	>Lus10028481 pacid=23165990 polypeptide=Lus10028481 locus=Lus10028481.g ID=Lus10028481.BGIv1.0 annot-version=v1.0 MADSICRTLRDGALEGEHAPSLTIKDTTASPYGFDVFTHVLSQLSSLILAGKSQSRGLVLVSYSRSPSFYLDLLSRRGVDVASSKNWIYIVDCYTDPLGW KLQLVKSGVVEDISSANSSAGTSILQDVKDVEKLYSLILDSGAGLVGQGKVRFSVAIDSVTEMRRHVPVSKIGWLISDLRSHDIHEIKLTTSLEYLSSMV ASVEPVNQSHDSHVRDLGSLSLVDNSFGKGKLHTRFKRRNGRVRIMNEEFHMEESGMKFTSVSGEDGLVSQGLVPKVQFNLELSEKEKMERAKVILPFEH QGTGKPIQIYDGRKSFAPGGITEAIAGGDSQNKPEESSGGGGEIIYFRDSDDERPDSDEDPDDDLDI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18410			unknown protein		Lus10028481 [exp]	0	1
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	6.6	0.9382
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	12.6	0.9237
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	13.4	0.9217
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Lus10009745 [exp]	16.1	0.9182
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10018004 [exp]	16.2	0.9117
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	17.6	0.9096
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10027922 [exp]	18.6	0.9051
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	20.1	0.9129
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	26.4	0.9178
AT2G17080			Arabidopsis protein of unknown...		Lus10023964 [exp]	26.5	0.9093

Compare expression of checked genes

Lus10028481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.