Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48175 220 / 1e-73 TAD1, EMB2191 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) AT1G68720 58 / 6e-10 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) AT5G28050 39 / 0.0007 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009163 [exp] 318 / 4e-112 AT1G48175 265 / 1e-91 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Lus10034402 [exp] 57 / 2e-09 AT1G68720 436 / 2e-131 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Lus10019153 [exp] 56 / 2e-09 AT1G68720 301 / 2e-84 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075300 [exp] 244 / 5e-83 AT1G48175 227 / 1e-76 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Potri.008G111100 [exp] 61 / 9e-11 AT1G68720 522 / 3e-162 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Potri.010G132600 [exp] 56 / 4e-09 AT1G68720 555 / 2e-174 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10028482 pacid=23166091 polypeptide=Lus10028482 locus=Lus10028482.g ID=Lus10028482.BGIv1.0 annot-version=v1.0 ATGCACTACTCTGCTTCTGTTCAAGAGTCTTCACCTGAGACTCTTGCCTGGATGGAGCTTGCACTGAATCAGGCAAAAGAAGCCTTGAACGCGCTAGAAG TGCCAATTGGTTGCGTGATAGTTGCAGATGGGAGAGTTATTGCATCTGGAAGAAATCGAACTACAGAGACTAGAAATGCTACAAGGCATGCAGAGATGGA AGCAATTGACCCTCTTCTTGAAGAGTGGAAAAAGGCTGGACTATCAGATTCACAAGTTGCCGAAAAATTCTCGAAATGCATTCTGTACGTGACATGCGAG CCGTGTATTATGTGTGCTGCTGCTTTGTCTATCCTTGGTATAAAGGAAGTATACTATGGATGTGCGAACGATAAATTTGGAGGGTGTGGCTCAATATTGT CACTGCATTCAAGCAACTCGCAACCACAATCTAGCGGGGAAGTTAAGCAAGGTTTCAAATGCAGTGGTGGAATAATGGCAGCAGAAGCAGTCTCGCTTCT GCGAAATTTCTATGAGCAAGGGAACCCTAATGCTCCAAAGCCTCACAGGCCAGTTGTTATTCAGCATTTAACTACATAG
AA sequence Show only first row Show all	>Lus10028482 pacid=23166091 polypeptide=Lus10028482 locus=Lus10028482.g ID=Lus10028482.BGIv1.0 annot-version=v1.0 MHYSASVQESSPETLAWMELALNQAKEALNALEVPIGCVIVADGRVIASGRNRTTETRNATRHAEMEAIDPLLEEWKKAGLSDSQVAEKFSKCILYVTCE PCIMCAAALSILGIKEVYYGCANDKFGGCGSILSLHSSNSQPQSSGEVKQGFKCSGGIMAAEAVSLLRNFYEQGNPNAPKPHRPVVIQHLTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10028482 [exp]	0	1
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	4.7	0.7783
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	11.0	0.7755
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10014791 [exp]	12.3	0.6307
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034109 [exp]	16.7	0.7314
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	19.9	0.7658
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	20.9	0.7400
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10034380 [exp]	24.3	0.7166
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10013548 [exp]	25.8	0.7285
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	26.4	0.7363
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	27.0	0.7281

Compare expression of checked genes

Lus10028482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.