Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60335 187 / 1e-61 Thioesterase superfamily protein (.1) AT1G76150 39 / 0.0005 ECH2, ATECH2 enoyl-CoA hydratase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009162 [exp] 309 / 1e-109 AT5G60335 191 / 6e-63 Thioesterase superfamily protein (.1) Lus10031971 [exp] 211 / 2e-70 AT5G60335 152 / 5e-47 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133800 [exp] 194 / 2e-64 AT5G60335 208 / 2e-69 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01575 [flax] [poplar] MaoC_dehydratas MaoC like domain
Representative CDS sequence Show only first row Show all	>Lus10028483 pacid=23166011 polypeptide=Lus10028483 locus=Lus10028483.g ID=Lus10028483.BGIv1.0 annot-version=v1.0 ATGGTGGCCATCAAGAGTCTCATATCTAGATACTTGTCAACTGGAGCTACTATTCCACCACTTAGAACCGGAGATATTCTGCGACGAACCAGAGTTTTCT CATGCGAAGACGTTCTTCAGTATTCAGAGGCCAGTCTAGATTGCAACCCTCTGCATTTTGATGCTGAAACGGCTCGGAATTCAGGATTCGAGGATCAATT AGTCCACGGAATGCTCGTTGCTGCACTCTTCCCCTGCATTATCTCGTCTCACTTCCCGGGTGCTGTTTATGCGTCACAAAGCTTGCATTTCAAGATACCG GTGTATATCGGAGAAGAGATCACTGGGGAGGTCCAAGCTACTAATGTTAGACAATACAAGAATAACAAGTACATCGCCAAATTTGCAACGAAATGCTTCA AGAGGAAGGCTGACAAGGACATGCTAGTTATCGACGGGGAGGCTACTGCATTTCTGCCACTCTGGAGATAA
AA sequence Show only first row Show all	>Lus10028483 pacid=23166011 polypeptide=Lus10028483 locus=Lus10028483.g ID=Lus10028483.BGIv1.0 annot-version=v1.0 MVAIKSLISRYLSTGATIPPLRTGDILRRTRVFSCEDVLQYSEASLDCNPLHFDAETARNSGFEDQLVHGMLVAALFPCIISSHFPGAVYASQSLHFKIP VYIGEEITGEVQATNVRQYKNNKYIAKFATKCFKRKADKDMLVIDGEATAFLPLWR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60335			Thioesterase superfamily prote...		Lus10028483 [exp]	0	1
AT4G37020			unknown protein		Lus10000435 [exp]	3.7	0.8678
AT3G52050			5'-3' exonuclease family prote...		Lus10035938 [exp]	3.7	0.8235
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10010651 [exp]	4.0	0.8708
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10013734 [exp]	6.0	0.8407
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	7.7	0.8631
AT5G65880			unknown protein		Lus10039652 [exp]	8.7	0.8514
AT4G13590			Uncharacterized protein family...		Lus10011763 [exp]	9.5	0.8326
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027535 [exp]	10.2	0.8477
AT2G28230			TATA-binding related factor (T...		Lus10030830 [exp]	11.8	0.8388
AT3G16190			Isochorismatase family protein...		Lus10037581 [exp]	12.0	0.8358

Compare expression of checked genes

Lus10028483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.