Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67060 201 / 2e-66 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009161 [exp] 240 / 1e-81 AT1G67060 371 / 7e-132 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G098800 [exp] 208 / 4e-69 AT1G67060 353 / 9e-125 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028484 pacid=23166003 polypeptide=Lus10028484 locus=Lus10028484.g ID=Lus10028484.BGIv1.0 annot-version=v1.0 ATGTCGACGCCGAACTGGGAACTGCAGAACTGCTGTCAGAAAGACCAAGTCACCTTCTTGGTTACCATCGGCGTCTTCTCCCTTGTCATCCTCGCGCTGT GGAGGACAGTGCTACTAACGCCGTTTAAGCTCATCACAGTGTTTATGCACGAAGCCAGTCATGCAATTGCTTGCATACTCACTTGCGGAAAGGTCGAAGG GATTCAGGTTCATGCCAATGAAGGAGGCGTGACACAAACACGTGGTGGCATATACTGGCTGATCTTGCCTGCAGGATATCTTGGTTCTTCGTTTTGGGGA ATGCTTTTGATACTTGCATCCACCAATCTTCTTACCGCAAGAATTGCTGCTGGTTGTTTGGGTGTTGCTCTCCTCGTTGTGCTTTTTATTGCTAAGAATG AGGTTCACATTGAGGAAACGCCAGCTGACTATGAGCATTTGCGTTAA
AA sequence Show only first row Show all	>Lus10028484 pacid=23166003 polypeptide=Lus10028484 locus=Lus10028484.g ID=Lus10028484.BGIv1.0 annot-version=v1.0 MSTPNWELQNCCQKDQVTFLVTIGVFSLVILALWRTVLLTPFKLITVFMHEASHAIACILTCGKVEGIQVHANEGGVTQTRGGIYWLILPAGYLGSSFWG MLLILASTNLLTARIAAGCLGVALLVVLFIAKNEVHIEETPADYEHLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67060			unknown protein		Lus10028484 [exp]	0	1
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031313 [exp]	14.8	0.7964
AT5G58100			unknown protein		Lus10008552 [exp]	45.9	0.7608
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000817 [exp]	60.0	0.7685
AT2G45670			calcineurin B subunit-related ...		Lus10036544 [exp]	61.3	0.7856
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10040021 [exp]	75.4	0.7661
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10005113 [exp]	87.3	0.7582
AT2G28605			Photosystem II reaction center...		Lus10038658 [exp]	92.3	0.7604
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001018 [exp]	135.2	0.7585
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	139.1	0.7559
AT3G14470			NB-ARC domain-containing disea...		Lus10029704 [exp]	145.2	0.7473

Compare expression of checked genes

Lus10028484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.