Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16150 650 / 0 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G05030 318 / 3e-102 Major facilitator superfamily protein (.1) AT1G67300 281 / 2e-88 Major facilitator superfamily protein (.1.2) AT1G79820 268 / 5e-83 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT2G20780 164 / 3e-44 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 157 / 1e-41 ATINT1 inositol transporter 1 (.1) AT1G75220 154 / 6e-41 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G19450 152 / 3e-40 Major facilitator superfamily protein (.1) AT2G16130 151 / 1e-39 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT3G18830 151 / 2e-39 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009158 [exp] 922 / 0 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10017610 [exp] 756 / 0 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10033568 [exp] 753 / 0 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10035315 [exp] 285 / 2e-89 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10030010 [exp] 272 / 2e-84 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10034930 [exp] 242 / 5e-73 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10018581 [exp] 175 / 7e-48 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10025565 [exp] 167 / 2e-45 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10031637 [exp] 166 / 1e-44 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097800 [exp] 686 / 0 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.017G116400 [exp] 508 / 6e-179 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.014G060800 [exp] 302 / 3e-96 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185300 [exp] 284 / 1e-89 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.018G083200 [exp] 276 / 3e-86 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G135200 [exp] 173 / 2e-47 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 172 / 5e-47 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.004G152300 [exp] 165 / 2e-44 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 159 / 1e-42 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 158 / 5e-42 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10028486 pacid=23166014 polypeptide=Lus10028486 locus=Lus10028486.g ID=Lus10028486.BGIv1.0 annot-version=v1.0 ATGCCAGTATCATCCACCCTTGTCGTGAAAGCCAGCGTCTTTGGTTTCGACGCCGGATTACTGACGCAAAAACATCGGACCCTCGGATTGGCCGGTGGTG GTTCTTCTGCTGATCGCCGCCGTAGCGTGAGGGTGACGAATTCGTTGTCGTTGAAGAAAGATCGCTGCATGATTAATTCTTGCTTCGGCCTGCGTAATGA TTCGGCTCCGATGGGGACCGAGCTGGTTCAGCCTAGCCTCTTCAGGAACCGGACAGTCAGAGCTCTATCTTCCGATGGTGACATTGAAGATGCGGCTCCG TTAAACCCCCAGGAATTTACAGGCCAGAAAAGACCGTCTACTGGAACAGTCTTGCCGTTCGTTGGTGTTGCATGTCTTGGAGCTACTCTGTTCGGTTATC ATTTGGGAGTGGTGAATGGTGCTCTCGAGTACCTAGCTAAAGATCTTGGGATTGCTGAAAACGCTGTCATTCAAGGATGGATTGTCAGCACACTGCTTGC TGGTGCAACTGTTGGTACATTTACTGGTGGAGCATTGGCTGACAAATTTGGCAGAACAAGGACATTTCAGTTAGATGCTATCCCGCTAACCATCGGGGCA ATTCTTTGTGCCACAGCCCAAAGTGTACAAACTATGTTGATCGGTCGTCTACTTGCTGGTATTGGAATTGGCATCTCTTCTGCAATTGTGCCACTTTACA TATCCGAGATCTCGCCAACTGAAATCCGTGGTGCTCTAGGTTCTGTAAACCAGCTTTTTATTTGCATTGGGATTCTTTTGGCATTGGTTGCTGGGTTACC TTTATCTGGAAACCCCATATGGTGGCGAACAATGTTTGGGCTTTCTGCTGTGCCTTCCATCCTGTTGGCACTGGGAATGGCATTCTCTCCGGAAAGCCCA CGGTGGCTGGTCCAGCAAGGAAAGATTCCCGAAGCGGAGAAGGCCATACAGACACTTTACGGGAAAGAAAGAGTGTCGGAAGTCATGCAAGACTTGAGCT CATCTGGTCAAGGTTCCTCGGAGCCAGAGGCAGGGTGGTTTGATCTGTTTAGTACTCGTTACTGGAAAGTTGTAAGTGTGGGAGTAGCACTTTTCTTTTT CCAGCAGATGGCTGGTATAAATGCTGTGGTCTATTACTCAACTGCTGTGTTCCGAAGCGTTGGAATCGGATCTGATGTTGCAGCAAGCGCCCTCGTTGGA GCCTCGAATGTTATTGGCACAACGATTGCCTCTTCGTTGATGGACAAACAAGGAAGGAAAAGTCTTTTGGTCACAAGCTTTTTGGGAATGGCTGCGTCGA TGTTGCTGCTTTCCTTGTCCCTAACTTGGAAGGTCCTGGCACCGTATTCCGGCACGCTTGCTGTTCTTGGTACAGTTTGCTACGTCCTATCGTTTTCACT CGGGGCCGGTCCAGTACCTGCACTTCTACTGCCAGAGATATTTGCTTCCAGAATTAGAGCCAAAGCAGTTTCACTATCATTGGGCATGCACTGGATTGCA AACTTCGTGATCGGCCTTTATTTCTTGAGCGTGGTGAACAAGTACGGGATAAGCATGGTCTATTTAGGATTCTCAGGGGTCTGTCTTCTTGCGGTAGTGT ACGTACTTAACAATGTCGTCGAGACGAAAGGAAGATCGTTGGAGGAGATCGAACGTGCTTTGACTACACCAGCATGA
AA sequence Show only first row Show all	>Lus10028486 pacid=23166014 polypeptide=Lus10028486 locus=Lus10028486.g ID=Lus10028486.BGIv1.0 annot-version=v1.0 MPVSSTLVVKASVFGFDAGLLTQKHRTLGLAGGGSSADRRRSVRVTNSLSLKKDRCMINSCFGLRNDSAPMGTELVQPSLFRNRTVRALSSDGDIEDAAP LNPQEFTGQKRPSTGTVLPFVGVACLGATLFGYHLGVVNGALEYLAKDLGIAENAVIQGWIVSTLLAGATVGTFTGGALADKFGRTRTFQLDAIPLTIGA ILCATAQSVQTMLIGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILLALVAGLPLSGNPIWWRTMFGLSAVPSILLALGMAFSPESP RWLVQQGKIPEAEKAIQTLYGKERVSEVMQDLSSSGQGSSEPEAGWFDLFSTRYWKVVSVGVALFFFQQMAGINAVVYYSTAVFRSVGIGSDVAASALVG ASNVIGTTIASSLMDKQGRKSLLVTSFLGMAASMLLLSLSLTWKVLAPYSGTLAVLGTVCYVLSFSLGAGPVPALLLPEIFASRIRAKAVSLSLGMHWIA NFVIGLYFLSVVNKYGISMVYLGFSGVCLLAVVYVLNNVVETKGRSLEEIERALTTPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10028486 [exp]	0	1
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10011693 [exp]	2.2	0.8645
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	4.2	0.8277
AT5G62350			Plant invertase/pectin methyle...		Lus10027198 [exp]	6.6	0.8236
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	8.1	0.8215
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020118 [exp]	8.2	0.8280
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Lus10032284 [exp]	9.5	0.7834
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10021535 [exp]	10.0	0.7785
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Lus10032563 [exp]	10.2	0.7647
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10014836 [exp]	10.7	0.7743
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10014622 [exp]	11.0	0.8093

Compare expression of checked genes

Lus10028486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.