Plant FIBer expression Database

Lus10028487 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009157
[exp]
195 / 2e-65 AT2G47485 57 / 6e-11 unknown protein
Lus10009156
[exp]
184 / 3e-61 AT2G47485 50 / 2e-08 unknown protein
Lus10028488
[exp]
176 / 8e-58 ND 48 / 1e-07
Lus10033571
[exp]
124 / 3e-37 AT2G47485 43 / 9e-06 unknown protein
Lus10017613
[exp]
123 / 8e-37 AT3G62650 47 / 2e-07 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G119800
[exp]
76 / 2e-18 AT2G47485 66 / 2e-14 unknown protein
Potri.004G095200
[exp]
75 / 4e-18 AT2G47485 58 / 2e-11 unknown protein
Potri.004G095150
[exp]
75 / 4e-18 AT2G47485 58 / 2e-11 unknown protein
Potri.010G119200
[exp]
64 / 1e-13 AT2G47485 57 / 3e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10028487 pacid=23166154 polypeptide=Lus10028487 locus=Lus10028487.g ID=Lus10028487.BGIv1.0 annot-version=v1.0
ATGGAGCTGATTCCGACGTCGTGGAACAGATACTGGAGGAGGAACAGATACCAAAGGCTGAACGAAGCCCCCATCCGCAAGAGGAACATCCGAGTCGCAC
GGCTTGGCGGTGGCGGCGGCGGCAAGTTGTCTCCGGGGAGGTTGGCGTGGAAGATAAAGGTGGTGCCGAAGCTGAGGCTGAGAGTGGTGGTCACGGCGCC
GTTAAAGCTGGTGGCGAAGCTGAGGAATAGCTACGTGGACATGATGGTCAAACTGGCGGGAAGCGTGGGGTCGTTGAATACCAACAGGGTGTTCGGGAAC
AAGAGGATTCCTAAAGCGAGGCAGCTTCTGATGTCGTGCTCCGACCAAGAGTTCCAGAACCGGATTATTTACGAGATGTTTAAGAACATTTCGTCTGCTC
ATGAACTGAATCCTATGTAG
AA sequence
>Lus10028487 pacid=23166154 polypeptide=Lus10028487 locus=Lus10028487.g ID=Lus10028487.BGIv1.0 annot-version=v1.0
MELIPTSWNRYWRRNRYQRLNEAPIRKRNIRVARLGGGGGGKLSPGRLAWKIKVVPKLRLRVVVTAPLKLVAKLRNSYVDMMVKLAGSVGSLNTNRVFGN
KRIPKARQLLMSCSDQEFQNRIIYEMFKNISSAHELNPM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G47485 unknown protein Lus10028487
[exp]
0 1
AT5G50175 unknown protein Lus10043318
[exp]
1.4 0.9031
AT4G14640 CAM8, AtCML8 calmodulin-like 8, calmodulin ... Lus10041179
[exp]
4.2 0.8635
AT1G15520 ATABCG40, ABCG4... Arabidopsis thaliana ATP-bindi... Lus10041685
[exp]
5.3 0.8702
AT3G51680 AtSDR2 short-chain dehydrogenase/redu... Lus10029438
[exp]
7.5 0.8624
AT2G39650 Protein of unknown function (D... Lus10002695
[exp]
9.5 0.8629
AT4G35160 O-methyltransferase family pro... Lus10001510
[exp]
10.2 0.8433
AT1G29670 GDSL-like Lipase/Acylhydrolase... Lus10028738
[exp]
10.2 0.8497
AT5G50175 unknown protein Lus10019469
[exp]
11.2 0.8517
AT3G26600 ARO4 armadillo repeat only 4 (.1) Lus10004620
[exp]
14.0 0.8639
AT2G26980 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.... Lus10022590
[exp]
21.4 0.8477

Lus10028487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.