Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009156 [exp] 182 / 1e-60 AT2G47485 50 / 2e-08 unknown protein Lus10009157 [exp] 176 / 5e-58 AT2G47485 57 / 6e-11 unknown protein Lus10028487 [exp] 171 / 1e-55 AT2G47485 52 / 4e-09 unknown protein Lus10033571 [exp] 119 / 5e-35 AT2G47485 43 / 9e-06 unknown protein Lus10017613 [exp] 115 / 8e-34 AT3G62650 47 / 2e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G119800 [exp] 72 / 8e-17 AT2G47485 66 / 2e-14 unknown protein Potri.004G095200 [exp] 68 / 3e-15 AT2G47485 58 / 2e-11 unknown protein Potri.004G095150 [exp] 68 / 3e-15 AT2G47485 58 / 2e-11 unknown protein Potri.010G119200 [exp] 62 / 6e-13 AT2G47485 57 / 3e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028488 pacid=23166162 polypeptide=Lus10028488 locus=Lus10028488.g ID=Lus10028488.BGIv1.0 annot-version=v1.0 ATGGAGCTCATTCCGACATCGTGGAACAGATACTGGAGGAGGAACAGATACCTAAGGCTGAGCGAAGCCCCCCTCCGGAAGAGAAACATTCGAGCCGCTA GGCTCGGAAACGGCGGCGGACACAACTCCTCCCCTGGGTGGAGGATAAAGGTGGTGCCGAAGCTGAGGCTTAGAGTGGTGGTCTCGGCTCCGTTAAAGAT GGTGACGAAGCTGAAGAATAGGTACGTGGACATGATGGTCAAACTGGCGGGGAGCGTGGGGTCGTTGAATACGAACAGGGTGTTCGGTAACAAGAGGGTT CCTAAAGCGAGGCAGCTACGGATGTCTTGCTCCGACCAAGAGTTCCAGAACCGGATTATTTACGAGATGTTTAAGAACATCTCGTCTGCTCATGAATTGA CTCCTTTGTAG
AA sequence Show only first row Show all	>Lus10028488 pacid=23166162 polypeptide=Lus10028488 locus=Lus10028488.g ID=Lus10028488.BGIv1.0 annot-version=v1.0 MELIPTSWNRYWRRNRYLRLSEAPLRKRNIRAARLGNGGGHNSSPGWRIKVVPKLRLRVVVSAPLKMVTKLKNRYVDMMVKLAGSVGSLNTNRVFGNKRV PKARQLRMSCSDQEFQNRIIYEMFKNISSAHELTPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028488 [exp]	0	1
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10003858 [exp]	1.0	0.9535
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	4.0	0.9321
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10006731 [exp]	5.5	0.8986
AT3G06880			Transducin/WD40 repeat-like su...		Lus10034937 [exp]	6.2	0.8667
AT4G10300			RmlC-like cupins superfamily p...		Lus10037245 [exp]	7.1	0.9057
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	11.1	0.9111
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10009718 [exp]	12.0	0.9064
AT1G21000			PLATZ transcription factor fam...		Lus10023411 [exp]	12.0	0.8948
					Lus10012066 [exp]	13.9	0.8867
AT1G78780			pathogenesis-related family pr...		Lus10018919 [exp]	20.8	0.8717

Compare expression of checked genes

Lus10028488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.