Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02600 360 / 5e-125 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5) AT2G01180 324 / 4e-111 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2) AT1G15080 307 / 2e-104 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) AT3G18220 262 / 1e-86 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009155 [exp] 471 / 4e-167 AT3G02600 488 / 1e-172 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10007933 [exp] 357 / 2e-117 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10035262 [exp] 321 / 3e-109 AT3G02600 429 / 3e-151 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10034630 [exp] 296 / 2e-99 AT3G02600 418 / 4e-147 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10034629 [exp] 293 / 7e-99 AT1G15080 442 / 4e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) Lus10035261 [exp] 291 / 6e-98 AT1G15080 443 / 2e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) Lus10013470 [exp] 248 / 1e-81 AT3G02600 326 / 1e-112 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10013469 [exp] 108 / 4e-26 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119400 [exp] 347 / 1e-119 AT3G02600 407 / 9e-143 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.017G119500 [exp] 347 / 2e-119 AT3G02600 460 / 1e-163 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.004G095400 [exp] 342 / 6e-117 AT3G02600 465 / 1e-164 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.008G124900 [exp] 339 / 2e-116 AT3G02600 420 / 3e-148 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.010G119300 [exp] 311 / 1e-105 AT1G15080 452 / 1e-161 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10028489 pacid=23165976 polypeptide=Lus10028489 locus=Lus10028489.g ID=Lus10028489.BGIv1.0 annot-version=v1.0 ATGAGTGATGTCCACCTTGGAGTTCATACTGCAACAAGTCATGGATCTACCGTAGCAAGGAAACACATGTACGATTGGCTCATACTTGCTCTTCTTGTAC TGATGGATGTTATTCTTTATATTATCCATCCTTTTTATCGCTTTGTTGGGAAGGATATGATGACAGATCTCAAGTACCCTTTGAAAAGCCAAACAGTTCC TATTTGGATAGTCCCAATGTATGCTATCCTTATACTAATAGTGATTTTCATTGTGGTGTATTTTCGAAGAAGAGATATTTATGATCTCCACCATGCTATA CTAGGTCTCTTGTTTTCCGTTCTAGTGACAGCTGTCATCACTGATTCAATAAAGAATGCTGTTGGTCGTCCTCGGCCTGATTTCTTCTGGCGTTGTTTTC CCGATGGAAATGATGCTTATGATCAGTTGGGGAATGTTATTTGCCATGGCGATAAAAGTGTCATAAAGGAAGGGCATAAGAGTTTTCCAAGTGGGCACAC TTCATCGTCCTTTGCTGGTCTAGGATTCCTGTCTCTCTATTTATCAGGAAAGGTAAAAGCATTTGACTCTAGAGGCCACATTGCAAAGCTATGCATCATC TTTCTCCCGCTACTTGTTGCATGTCTGGTTGGCATTTCTCGTGTGGATGACTATTGGCATCATTGGCAGGATGTTTTCGCTGGCGCTGTTCTCGGGCTCG TAGTGTCTACATTTTGCTATCAGCAGTTTTTCCCCCCACCATACCATCCTCAAGGTTGGGGCCCTTACGCTTATTTTCGGGTATTGGAAGAGGCACAAAA AACTACAGAGGCATCTTCTGCTGTGAATCTGGATCATAACAGCAATGTGGCAGAAAATGAAGAAGAGGGAGAAAAAGGGTTTATGGAGCTCCAACTCGAA GGTGATGATCCTAGTTCAAGAACGATCGCAGACGAAGAATGTAGGAGGAGTTAG
AA sequence Show only first row Show all	>Lus10028489 pacid=23165976 polypeptide=Lus10028489 locus=Lus10028489.g ID=Lus10028489.BGIv1.0 annot-version=v1.0 MSDVHLGVHTATSHGSTVARKHMYDWLILALLVLMDVILYIIHPFYRFVGKDMMTDLKYPLKSQTVPIWIVPMYAILILIVIFIVVYFRRRDIYDLHHAI LGLLFSVLVTAVITDSIKNAVGRPRPDFFWRCFPDGNDAYDQLGNVICHGDKSVIKEGHKSFPSGHTSSSFAGLGFLSLYLSGKVKAFDSRGHIAKLCII FLPLLVACLVGISRVDDYWHHWQDVFAGAVLGLVVSTFCYQQFFPPPYHPQGWGPYAYFRVLEEAQKTTEASSAVNLDHNSNVAENEEEGEKGFMELQLE GDDPSSRTIADEECRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	0	1
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	2.8	0.8605
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	4.9	0.8724
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	5.7	0.8663
AT5G11910			alpha/beta-Hydrolases superfam...		Lus10013517 [exp]	6.1	0.7867
AT5G02180			Transmembrane amino acid trans...		Lus10024374 [exp]	6.2	0.8652
					Lus10039070 [exp]	6.5	0.8506
AT5G59980			Polymerase/histidinol phosphat...		Lus10042842 [exp]	6.9	0.8247
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032659 [exp]	7.3	0.8368
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10017011 [exp]	8.4	0.8421
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	10.6	0.8192

Compare expression of checked genes

Lus10028489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.