Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36590 108 / 2e-28 MADS MADS-box transcription factor family protein (.1) AT5G60440 108 / 1e-27 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 101 / 2e-25 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT1G29962 96 / 4e-24 MADS AGL64 AGAMOUS-like 64 (.1) AT1G65360 93 / 2e-22 MADS AGL23 AGAMOUS-like 23 (.1) AT1G28450 91 / 4e-22 MADS AGL58 AGAMOUS-like 58 (.1) AT1G28460 90 / 7e-22 MADS AGL59 AGAMOUS-like 59 (.1) AT1G01530 88 / 2e-20 MADS AGL28 AGAMOUS-like 28 (.1) AT3G04100 83 / 5e-19 MADS AGL57 AGAMOUS-like 57 (.1) AT3G66656 79 / 8e-18 MADS AGL91 AGAMOUS-like 91 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028473 [exp] 342 / 6e-120 AT5G60440 102 / 8e-26 AGAMOUS-like 62 (.1) Lus10025872 [exp] 284 / 9e-96 AT5G60440 107 / 8e-27 AGAMOUS-like 62 (.1) Lus10015271 [exp] 91 / 6e-22 AT2G24840 114 / 6e-31 DIANA, AGAMOUS-like 61 (.1) Lus10020511 [exp] 88 / 1e-20 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10012449 [exp] 87 / 3e-20 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10030663 [exp] 82 / 9e-19 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10030824 [exp] 82 / 1e-18 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10016563 [exp] 81 / 3e-18 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1) Lus10040832 [exp] 78 / 2e-17 AT2G34440 135 / 1e-40 AGAMOUS-like 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130900 [exp] 135 / 5e-39 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.009G045900 [exp] 129 / 9e-37 AT3G04100 121 / 2e-34 AGAMOUS-like 57 (.1) Potri.001G251400 [exp] 125 / 3e-35 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 121 / 6e-33 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 119 / 2e-32 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.009G046100 [exp] 112 / 1e-30 AT5G60440 115 / 6e-32 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 106 / 1e-27 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 97 / 7e-24 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.004G131100 [exp] 91 / 4e-22 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1) Potri.016G118900 [exp] 82 / 2e-18 AT5G60440 123 / 4e-34 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10028490 pacid=23165992 polypeptide=Lus10028490 locus=Lus10028490.g ID=Lus10028490.BGIv1.0 annot-version=v1.0 ATGGAATTTCCGACCGTCAACATCTACGACGACGTAAGCAGCAGTAGCGAGGACAATATCGACATCACCAACATCCATCCGGTTCCCAAGAAAACCAGAG GAAGGCGAAAGATCCAAATGAAGAAGATCAAGAAAGATACGGATATGATGGTAACCTTCTCGAAACGTAGGTTTGGGATCTACAAGAAGGCTAGCGAGCT TGTCACCTTGACAGGCAGTGAGATTGCCTTTTTGGTCTATTCCCCTGCCGGCAATGCCTTCACCTTTGCTCATCCTTCCTTTGACTTCCTAGTCACCAAG TATTTGGGCATACAACACCTTGATCCGTCGATCATATCTTATGAAACCATTTATGTGCTGCAGCAGGACAGGATCAACGAGTTGACCGTCAGGTACACCA ACTCCCTTAAGAATTTGGAAAACGAGCAAAGGAAGGAGAAGGATTTGTCGGCTAGGTGTCATGGGAAGTCCTTGAACAACTGGTGGAACAGATGCATCGA TGATGTGACAACTTCTGAAATCCAAGAGCTCCAGAGTGCTTACATGGACTTCAATAACAAGATTGACCTAAGGAGGATGGAAGTCATGTTGGAGATTAAT AATCCATCGGTGGACATGGGACTACAGACTGGGCTGATAATGAATATGGGCCAGCCTAGAATGGCCCAATCGCTGCCAAATTTTTCCATGTGCAGCCCAA GTGAGGCTGTTAATTCGGGCTCGATGGTCGGGCCGAATGGTGGTGGTGGTGGAGCTGAGGCCTCTGATCCATTTTCCATATTCGGGTCAGGCGGTGGTGG AAATGAAAGCAGTGTTGATTATTCATCCTCAACTTTTACTATATAG
AA sequence Show only first row Show all	>Lus10028490 pacid=23165992 polypeptide=Lus10028490 locus=Lus10028490.g ID=Lus10028490.BGIv1.0 annot-version=v1.0 MEFPTVNIYDDVSSSSEDNIDITNIHPVPKKTRGRRKIQMKKIKKDTDMMVTFSKRRFGIYKKASELVTLTGSEIAFLVYSPAGNAFTFAHPSFDFLVTK YLGIQHLDPSIISYETIYVLQQDRINELTVRYTNSLKNLENEQRKEKDLSARCHGKSLNNWWNRCIDDVTTSEIQELQSAYMDFNNKIDLRRMEVMLEIN NPSVDMGLQTGLIMNMGQPRMAQSLPNFSMCSPSEAVNSGSMVGPNGGGGGAEASDPFSIFGSGGGGNESSVDYSSSTFTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36590	MADS		MADS-box transcription factor ...		Lus10028490 [exp]	0	1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10028473 [exp]	1.0	0.9309
					Lus10006897 [exp]	11.7	0.7190
					Lus10008321 [exp]	20.9	0.7062
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10027821 [exp]	23.2	0.6860
AT1G62935			unknown protein		Lus10009297 [exp]	27.7	0.6930
					Lus10013380 [exp]	33.4	0.6496
					Lus10002237 [exp]	52.0	0.6599
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10022259 [exp]	63.4	0.6413
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	65.1	0.6510
					Lus10025503 [exp]	92.0	0.6306

Compare expression of checked genes

Lus10028490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.