Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16210 1397 / 0 HEAT repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009154 [exp] 2063 / 0 AT5G16210 1538 / 0.0 HEAT repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095900 [exp] 1573 / 0 AT5G16210 1578 / 0.0 HEAT repeat-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028491 pacid=23166117 polypeptide=Lus10028491 locus=Lus10028491.g ID=Lus10028491.BGIv1.0 annot-version=v1.0 ATGATGGATGTGGAGAGATCGTCGCTCTGCAATTGCGTGGTGAATTTCTTGCTGGAGGAGAATTACCTGCTGACGGCATTCGAATTGCTCCACGAGCTGC TCGAAGATGGCAGGGATCAGCATGCTATTCGCCTCAAGGAATTCTTCTCTGATCCTTCCAACTTCCCTCCCGACCAGATCTCCCGCTTGAACTCTCTTAG AGTTGCAGACCCTCAGAGTTTGCTAGAAGAAAATGAAGCTACTCGAGAAAAATTGGCACTTAGTGAGTATGAACTACGGTTGGCACACGAGGACATTTCA AAATTGAAGTCCGATTTACAGAAGAAAGTGGACTTAACGCCAGCCCAGTTTATTGAGTCCAAGCCAGATGCATCCGGGAGCCCAGTATCAGAGCTTCAAA GACGAAAACAAGATGGTTCGTCCTATGACTTGGGTCCTTTGAAGGATAATGAGCGTAGGGATCTTAATTGTGCTGTGAAGGAATATCTACGATTGGCAGG ATACCGTCTTACTGCTATGACATTTTACGAAGAAGTTACAGATCAGAATTTAGATGTTTGGCAGGACACACCTGCCAGTGTGCCGGATGCACTGCGCCAT TATTACTATCAATACCTTTCGTCCACATCACAGGCAGCAGAGGAAAAAGTTGCCATGATTCGAGAAAAAGAATCTCTGTTGAAAGTGAGAGAGACATTGA ATGAGGAGAAGGAGAGGCTTCTAAAAGGCAAGGAGTTGGCTGAGAATCAGTTAAGTGGTTTAACTAAATCGTTTGAAGCTCTCCAGAAGGATTTCAAGGA CAAGGAGAATCAGATAAAAAGGCTGAAACTGTCACTGGAGCACCAAAGAAAGGACCTCAATGATTGCAGGTCAGAAATAACTTCATTAAAAATGCACATT GAGGGATATCGTTCTGGCAGAAACACAATGGCTAGTGATGCTGATACTGTTGAAAGCCCGTCACTTGAGATGTACAAGGAAGAGATAAAATTATTGCTTC TAGACATAGAAAAGTTGAAAGCTAAACGTATGACTTTTTCCGAGTCAATGGATCGCACAACCTCTGGAAAAGACTCAGCTCAACCTGAAGAAAAGGTGGT TGAGATTGATGAAGAGAAATCTATCATCTCTCATCCAGTTGATGCTGAAGCAGTTAACGAAGATGTTCAACCATCATCTGAAGATAGGAATAAGCATGAG GGAACTCTGCAGGATGTACCAGGAAATTATGATGAGGCAGTTAATGCTGTGGATGAAAATCAAAGAATCGTGGAACAAAATGCTGAAGTGCCATCACCTG CTCCTGGTCTTTCTTTAAAATCAGACAATCTAGGTTGTGATGGATCGTTAGAGAATACGGAGCTTCTCCCTCTCATGATGTGTGCAATTGAGCGTCATCC AGATGGCAACACAAGGGATTCGTTAACACATACATTATTCAATTTGATTAAACGCCCAGATGAGCAGCAGAGACAAATCATTATGGATGCATGTATTAGT CTGGCTAAGAATGTTGGACAGATGAGAACAGAAACAGAATTGCTTCCTCAGTGCTGGGAACAAATAAATCATATGTATGAAGAGCGCAGACTACTTGTTG CTCAATCTTGTGGACAGATTGCAGAATTTGTCAGGCCTGAGATCCGGGATTCTTTAATTCTTTCTATTGTCCAGCAACTGATTGAGGATTCTGCAACTGT TGTTCGAGATGCTGCTGCTCATAATTTGGCTTTGCTGCTTCCACTATTTCCTAACGTGGACAAATACTTCAAGGTCGAAGAGTTGATGTTCCAACTGGTT TGTGATCCTTCTGGAATCGTGGTGGAAACTACACTAAGGGAGCTGCTTCCTGCAGTAATAAAATGGGGAAACAATTTAGAACATATTTTGAAAGTTCTAC TGTCCCATGCCTTAAGTAGTGCTCAGCGTTGCCCTCCACTTTCTGGTGTTGAAGGTTCACTCGAGTCTCATCTACGGGTCTTAGGGGAACGCGAACGCTG GAATCTTGACGTTTTGTTAAGGATGCTTGTGGAATTGCTTCCACTGATTCGAGAAAAGGCTTTTGAGACTTGTCCATTTTCTCCAGTTTTGGAGTCAAAT AACACAATTTCTGATCCGTTGCTTGAACTTTATGCAGGCAGCGGACATTTAGAATGGCCTGCATTTGAATGGATGCATGCGGACTGCTTTCCAGCCCTTA TAAATCTGTCCTGTTTATTACATCAGAAGGAAGACAATCTGAGAAACAGAATTACAAAGTTCTTATTAGCTGTAGGAAAAAATTTCGGGGATTCATATCT GGCTCATATAATGCTGCCTGTGTTCTTGGTAGCAGTTGGTGATGATGCTGATTTTACCTTTTTCCCTTCGGCGATACATTCAAGAATCAAAGGACTGAAA CCAAAAACTTCCATTGCTACAAGATTGGCTACAACGTGTGTACTGCCGCTTCTTTTGGCTGGCATTTTAGGTTCTCCCAGCAAACATGAAGAGCTAGCAG ACTACTTGAGAAAGCTGTTAATTGATAACGAACTGAAAGAGAGTCAGTCAGCGAGGCGCTATTCAGATGTTGTTGACGCTGTTCGGTTTCTCTGTACTTT CGAGCAGTATCACGGCATGATATTTAACATTTTGTGGGAAATGGTTGTTAGCTCCAGTGCAGATATGAAAATTCATGCTGCAAATCTGTTGAAAGTCATC GTCCCATATGTCGATACCAAAGTTGCTTCAGCCCACGTTGTACCTGCACTGGTAACTCTTGGTTCTGACCAGAACCTGAATGTGAAGTACGTCAGCATAG AATCGTTTGGAGCAGTGGCACAACATTTCAAAAATGACTTGATTGTTGATAAGATACGAGTTCAAATGGATGCATTCCTGGAAGATGGATCACATGAAGC TACAATTGCTGTTGTCCGAGCATTATCTGTAGCAGTGCCGCACACAACTGAGAGACTTAGAGATTATATCCTAACTTTAAGAAGTTCCGTTACTTATTTG GAAAAATATAAGAATCGTCGGTTACATATAATTTCACTAGCTCAGTTAAGTGATGTTGTTCATCGGCGTGAGAGGGCTAATGCATTTTGCGAAGCTATCC GTGCGCTGGACGCTACAGATCTCTCGGTAAATAGTGTGAAGGAGTACCTGCTTCCAGCGATACACAACATGCTAAAAGACCCGGATGCACTAGATCCAGC TCACAAGGAAGCTCTTGAGATAATTATGAAGGAAAGGTCTGGCGGAACTCTGGAATCCATAAGTAAGGTGATGGGAGCTCATCTAGGGATAGCATCATCT GTAAGCAGCTTCTTCGGGGAGAGCGGGATATTGGGTAAGAAAGAAACTGCAGACTCATCTCCGCAGCAGTCGCAGCCTTCATCCCCGAAGGCCACGCTGC TTCCGCCACCTCAACCAGCGGAAGATACGAGATTCTTGCGAATCATGAGAGGCAACTTCACTGACATGCTGCGGACTAAAACGAAGAACCCTGATGAAGC AGCACATTAG
AA sequence Show only first row Show all	>Lus10028491 pacid=23166117 polypeptide=Lus10028491 locus=Lus10028491.g ID=Lus10028491.BGIv1.0 annot-version=v1.0 MMDVERSSLCNCVVNFLLEENYLLTAFELLHELLEDGRDQHAIRLKEFFSDPSNFPPDQISRLNSLRVADPQSLLEENEATREKLALSEYELRLAHEDIS KLKSDLQKKVDLTPAQFIESKPDASGSPVSELQRRKQDGSSYDLGPLKDNERRDLNCAVKEYLRLAGYRLTAMTFYEEVTDQNLDVWQDTPASVPDALRH YYYQYLSSTSQAAEEKVAMIREKESLLKVRETLNEEKERLLKGKELAENQLSGLTKSFEALQKDFKDKENQIKRLKLSLEHQRKDLNDCRSEITSLKMHI EGYRSGRNTMASDADTVESPSLEMYKEEIKLLLLDIEKLKAKRMTFSESMDRTTSGKDSAQPEEKVVEIDEEKSIISHPVDAEAVNEDVQPSSEDRNKHE GTLQDVPGNYDEAVNAVDENQRIVEQNAEVPSPAPGLSLKSDNLGCDGSLENTELLPLMMCAIERHPDGNTRDSLTHTLFNLIKRPDEQQRQIIMDACIS LAKNVGQMRTETELLPQCWEQINHMYEERRLLVAQSCGQIAEFVRPEIRDSLILSIVQQLIEDSATVVRDAAAHNLALLLPLFPNVDKYFKVEELMFQLV CDPSGIVVETTLRELLPAVIKWGNNLEHILKVLLSHALSSAQRCPPLSGVEGSLESHLRVLGERERWNLDVLLRMLVELLPLIREKAFETCPFSPVLESN NTISDPLLELYAGSGHLEWPAFEWMHADCFPALINLSCLLHQKEDNLRNRITKFLLAVGKNFGDSYLAHIMLPVFLVAVGDDADFTFFPSAIHSRIKGLK PKTSIATRLATTCVLPLLLAGILGSPSKHEELADYLRKLLIDNELKESQSARRYSDVVDAVRFLCTFEQYHGMIFNILWEMVVSSSADMKIHAANLLKVI VPYVDTKVASAHVVPALVTLGSDQNLNVKYVSIESFGAVAQHFKNDLIVDKIRVQMDAFLEDGSHEATIAVVRALSVAVPHTTERLRDYILTLRSSVTYL EKYKNRRLHIISLAQLSDVVHRRERANAFCEAIRALDATDLSVNSVKEYLLPAIHNMLKDPDALDPAHKEALEIIMKERSGGTLESISKVMGAHLGIASS VSSFFGESGILGKKETADSSPQQSQPSSPKATLLPPPQPAEDTRFLRIMRGNFTDMLRTKTKNPDEAAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16210			HEAT repeat-containing protein...		Lus10028491 [exp]	0	1
AT3G27325			hydrolases, acting on ester bo...		Lus10014564 [exp]	2.8	0.9165
AT4G24530			O-fucosyltransferase family pr...		Lus10009276 [exp]	5.1	0.8623
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	5.2	0.9240
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10013485 [exp]	9.2	0.8806
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	10.1	0.9088
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	10.2	0.9069
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013369 [exp]	11.0	0.8760
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015333 [exp]	13.4	0.8934
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	13.4	0.9031
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	14.1	0.9023

Compare expression of checked genes

Lus10028491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.