Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03530 669 / 0 NPC4 non-specific phospholipase C4 (.1) AT3G03520 637 / 0 NPC3 non-specific phospholipase C3 (.1) AT3G03540 626 / 0 NPC5 non-specific phospholipase C5 (.1) AT1G07230 566 / 0 NPC1 non-specific phospholipase C1 (.1) AT2G26870 561 / 0 NPC2 non-specific phospholipase C2 (.1) AT3G48610 530 / 0 NPC6 non-specific phospholipase C6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009153 [exp] 982 / 0 AT3G03530 694 / 0.0 non-specific phospholipase C4 (.1) Lus10005860 [exp] 578 / 0 AT1G07230 810 / 0.0 non-specific phospholipase C1 (.1) Lus10040678 [exp] 562 / 0 AT1G07230 809 / 0.0 non-specific phospholipase C1 (.1) Lus10035935 [exp] 522 / 0 AT3G48610 773 / 0.0 non-specific phospholipase C6 (.1) Lus10025726 [exp] 520 / 0 AT3G48610 774 / 0.0 non-specific phospholipase C6 (.1) Lus10036038 [exp] 325 / 1e-108 AT2G26870 423 / 1e-147 non-specific phospholipase C2 (.1) Lus10036039 [exp] 150 / 1e-42 AT2G26870 229 / 4e-73 non-specific phospholipase C2 (.1) Lus10001207 [exp] 143 / 5e-41 AT1G07230 146 / 7e-43 non-specific phospholipase C1 (.1) Lus10009690 [exp] 145 / 1e-38 AT2G26870 258 / 9e-82 non-specific phospholipase C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073600 [exp] 786 / 0 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1) Potri.001G275500 [exp] 563 / 0 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.012G099300 [exp] 556 / 0 AT3G48610 834 / 0.0 non-specific phospholipase C6 (.1) Potri.009G069900 [exp] 556 / 0 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.015G097900 [exp] 547 / 0 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1) Potri.001G250500 [exp] 546 / 0 AT1G07230 820 / 0.0 non-specific phospholipase C1 (.1) Potri.009G045100 [exp] 544 / 0 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF04185 [flax] [poplar] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Lus10028492 pacid=23166007 polypeptide=Lus10028492 locus=Lus10028492.g ID=Lus10028492.BGIv1.0 annot-version=v1.0 ATGGTGGTCGAAACACCAGCTGAAAGCTCGTCATCACCTTCCCAATCCCCAATCAAAACGGTGGTGGTTCTAGTCCAAGAGAACCGGTCCTTCGATCATA TGCTCGGCTGGCTCAAAACAATCAACCCGGAAATCAACGGAGTAACCGGATCAGAATCCAACCCGATCTCCACCTCCAACTCCAACTCCAACCTCGTCTA CTTCAAAGATCAGGCAGCCTACGTGGACCCCGACCCGGGACACTCCATCCAGGCCATCTACGAGCAAGTCTTTGGGGTGACGTGGACTGCCGAGTCAGCA GCCTCCAACCTCACTCCGAAGATGAACGGGTTCGCTCAGAACGCTGAGCGGACCCAAAAGGGGATGGCCGAGACCGTCATGAACGGGTTCAGGCCCGAGA CGGTCCCGGTTTACAAGGAGCTGGCGGAGAATTTCGCGGTTTGCGACCGGTGGTTCGCTTCAGTTCCAGCGTCCACGCAGCCGAACAGGCTGTCCGTCCA CTCGGCCACGTCACACGGGGCGACGAGTAACGACACGAAGCAGCTGGCTGCTGGGTTCCCTCAGAAGACGATTTTCGAGTCGATGGAAGAGTCTGGTTTT AGCTTCGGGATTTATTATCAGTACCCTCCTTCTACTCTCTTTTACAGGAACCTGAGGAAGCTGAAGTACATAGACAACTTCCACCAGTTCGATATAAGCT TCAAGAAGCACTGCGAGGAAGGGAAGCTCCCGAACTACGTCGTAGTCGAACAGAGATACTTCGATGTCCCCTCCATCCCGGGAAACGACGATCATCCTTC CCACGATGTCTCGGAAGGGCAGAAATTCGTGAAGCAAGTCTACGAGTCCCTCAGGTCTAGCCCCCAGTGGAACGAGATGCTCTTCGTCATCATCTACGAC GAACATGGTGGCTTCTACGACCACGTTCCGACTCCTGCTGTCGACGTTCCCAGTCCCGACGACCTTGTGGGCCCCGATCCTTACAACTTCAAGTTTGACC GCCTCGGCGTCAGAATCCCTGCCTTCCTCATCTCCCCCTGGATTCGCCCTGGAACAGTGGTGCATGGGCCATCAGGACCTTACCCGAACTCAGAATTCGA GCATTCTTCCATCCCAGCAACTGTGAAAAAGATATTCAACCTCAAGGATTTCTTGACCAAGCGTGACGCTTGGGCCGGCACTTTCGACAGCGTTCTCACT CTCAGCACTCCCAGAACCGATTGTCCACTGAAACTGGGAGAGCCGGTGAAGCTGAGAGACGGAGAAGCGAAAGGAGAAGCGAAGTTGAATGAATTCCAGG AGGTGATGGTTCAGATGACGGCGGCGCTGCTCGGGGAGCAGAACAAGAAGAACTCTACGTATCCGGACAAGCTTGTCGAAGGGATGACTGTGGCCGACGC TCTCAAGTTCAGCGAGGAAGGGTACAAGAAGTTCATTGATGATTGCGGGAAAGCCAGGGCCAACGGAGCTGACGAGAACGACGTCGTTTGCTTCGCTGAG GAAGCAGCAGCCCAGTCCAAATCTGCGTTTCGTAAACTGTTTTCTTGCCTTGTGTGCAACCGTAGTTGA
AA sequence Show only first row Show all	>Lus10028492 pacid=23166007 polypeptide=Lus10028492 locus=Lus10028492.g ID=Lus10028492.BGIv1.0 annot-version=v1.0 MVVETPAESSSSPSQSPIKTVVVLVQENRSFDHMLGWLKTINPEINGVTGSESNPISTSNSNSNLVYFKDQAAYVDPDPGHSIQAIYEQVFGVTWTAESA ASNLTPKMNGFAQNAERTQKGMAETVMNGFRPETVPVYKELAENFAVCDRWFASVPASTQPNRLSVHSATSHGATSNDTKQLAAGFPQKTIFESMEESGF SFGIYYQYPPSTLFYRNLRKLKYIDNFHQFDISFKKHCEEGKLPNYVVVEQRYFDVPSIPGNDDHPSHDVSEGQKFVKQVYESLRSSPQWNEMLFVIIYD EHGGFYDHVPTPAVDVPSPDDLVGPDPYNFKFDRLGVRIPAFLISPWIRPGTVVHGPSGPYPNSEFEHSSIPATVKKIFNLKDFLTKRDAWAGTFDSVLT LSTPRTDCPLKLGEPVKLRDGEAKGEAKLNEFQEVMVQMTAALLGEQNKKNSTYPDKLVEGMTVADALKFSEEGYKKFIDDCGKARANGADENDVVCFAE EAAAQSKSAFRKLFSCLVCNRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10028492 [exp]	0	1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10033799 [exp]	1.7	0.8429
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Lus10007896 [exp]	5.3	0.8709
					Lus10025503 [exp]	7.5	0.8557
AT5G36930			Disease resistance protein (TI...		Lus10027920 [exp]	9.8	0.7417
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10042210 [exp]	11.7	0.8294
AT5G01880			RING/U-box superfamily protein...		Lus10025144 [exp]	12.7	0.7281
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000201 [exp]	15.9	0.7536
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011980 [exp]	16.2	0.8116
					Lus10001144 [exp]	18.3	0.7822
					Lus10003759 [exp]	18.3	0.6691

Compare expression of checked genes

Lus10028492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.