Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38200 577 / 0 Class I glutamine amidotransferase-like superfamily protein (.1) AT1G66860 550 / 0 Class I glutamine amidotransferase-like superfamily protein (.1) AT1G15040 485 / 3e-171 Class I glutamine amidotransferase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009152 [exp] 807 / 0 AT5G38200 593 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10016700 [exp] 584 / 0 AT5G38200 621 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10035996 [exp] 582 / 0 AT5G38200 625 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10039726 [exp] 161 / 1e-47 AT5G38200 107 / 5e-28 Class I glutamine amidotransferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G118551 [exp] 624 / 0 AT5G38200 637 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.010G120600 [exp] 594 / 0 AT5G38200 657 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF07722 [flax] [poplar] Peptidase_C26 Peptidase C26
Representative CDS sequence Show only first row Show all	>Lus10028493 pacid=23166094 polypeptide=Lus10028493 locus=Lus10028493.g ID=Lus10028493.BGIv1.0 annot-version=v1.0 ATGGCTGCCGACCTCTCCGTCATCCTGCCACGTGTCCTCATCGTCTCCAGGCGCAGCGTCCGCAAGAACAAGTTCGTCGATTTCGTCGGCGAGTACCATC TGGATCTGATAGTCGGATACGGCGCCGTTCCCGTGATAGTGCCTCGTGTCAGCGGCGTCCACCTTCTCCTTGACAGCTTCGAGCCCATCCACGGCGTCCT CCTCTGCGAAGGCGAAGACGTCGACCCTTCCCTTTACCAAACTCTTTCCGACGATGCCGCCGGCACCGCTCTCTCGCCGGAGGAGCTCGACAAGATCAGG AGGCTCCACGTCAGCGACACCGCCATCGACAGGGAGAAAGACTCCATCGAGCTCCGCCTCGCCAAGCTATGCCTTGAGCGCAACATTCCCTTCTTGGGAA TCTGCCGTGGGTCCCAGGTCCTCAACGTGGCATGCGGTGGGACCCTCTACCAAGACGTGGACCACGAGCTGATTAATTCGAAGATGACTAGGCACATGGA TTACGGTAATTACGACGGCCACAGGCATCCGATAAACGTTGTGGAGGGGACGCCGTTGCATGAGTGGTTTAGGGATTCGTTCGAGGAGGAGGGTAGAATG GGGATTTCGGTGAATAGCTATCACCACCAAGGCGTGAAGAGGCTGGCTCAGAGATTCGTCCCCATGGCTTCCGCTCCGGACGGGTTGGTTGAAGGGTTCT ACGACCCGGATGCTTATAACCCGGAGGAGGGTAAGTTCATAATGGGCCTCCAGTTTCACCCCGAGCGGATGCGGGACCCCGATACTGACCGGTTCGATTA CCCTGGCTGCCCCAGGGCTTATCAGGAATTCGTGAAAGCTGTGAGGGCGTATCAAAAGAGGCTTGTAAGTACAACGATGACGAAGCCGGTGAGAGTAGTA GATGAAGAAATGGAGAAGAAGAGGAAAGTAATAGTAAGGAGTTTCTCCATTGCTAGGGATATGTATTATTCAGCTGGGGAGATACAGCCATCGAGAGAAT CAGAGTTGAAACCTGGAGCAGAATTCCTTGAGTCAAATAGAGCGCTGAGTGTGCAGCAGGAGAAGAGGCTGAAGCAGATGGGGGCGACGGTGAGGAACGC AGGTTGTTACATAGAGAAAGTGAAACGTAACGAGGAAAGGGAGAAAGTTGCGAGAAGTGTGATGCAGAAAATGTCGGTGGAACAGCTGTCCGAGTTTTTG TCTTTCTACCGAAAGATGTCCCATATTTGCTCCGACGTTTTGGAAACAAAGCTTCCTCATCTTGGCGTTGCCTTGGAATGA
AA sequence Show only first row Show all	>Lus10028493 pacid=23166094 polypeptide=Lus10028493 locus=Lus10028493.g ID=Lus10028493.BGIv1.0 annot-version=v1.0 MAADLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVSGVHLLLDSFEPIHGVLLCEGEDVDPSLYQTLSDDAAGTALSPEELDKIR RLHVSDTAIDREKDSIELRLAKLCLERNIPFLGICRGSQVLNVACGGTLYQDVDHELINSKMTRHMDYGNYDGHRHPINVVEGTPLHEWFRDSFEEEGRM GISVNSYHHQGVKRLAQRFVPMASAPDGLVEGFYDPDAYNPEEGKFIMGLQFHPERMRDPDTDRFDYPGCPRAYQEFVKAVRAYQKRLVSTTMTKPVRVV DEEMEKKRKVIVRSFSIARDMYYSAGEIQPSRESELKPGAEFLESNRALSVQQEKRLKQMGATVRNAGCYIEKVKRNEEREKVARSVMQKMSVEQLSEFL SFYRKMSHICSDVLETKLPHLGVALE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	0	1
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	1.0	0.9642
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	2.8	0.9632
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	2.8	0.9580
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	3.3	0.9496
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	3.7	0.9528
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	3.9	0.9598
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	3.9	0.9553
AT2G38640			Protein of unknown function (D...		Lus10010681 [exp]	6.1	0.9303
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	6.9	0.9490
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	7.3	0.9541

Compare expression of checked genes

Lus10028493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.