Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38210 383 / 1e-121 Protein kinase family protein (.1) AT1G66880 370 / 1e-111 Protein kinase superfamily protein (.1) AT1G18390 352 / 2e-110 Protein kinase superfamily protein (.1.2) AT1G25390 338 / 2e-105 Protein kinase superfamily protein (.1) AT2G23450 236 / 8e-67 Protein kinase superfamily protein (.1.2) AT5G02070 221 / 6e-62 Protein kinase family protein (.1) AT1G69910 221 / 7e-62 Protein kinase superfamily protein (.1) AT5G66790 219 / 3e-61 Protein kinase superfamily protein (.1) AT3G46290 217 / 2e-59 HERK1 hercules receptor kinase 1 (.1) AT3G53840 214 / 2e-59 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009150 [exp] 671 / 0 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10009151 [exp] 432 / 1e-144 AT1G66880 129 / 2e-32 Protein kinase superfamily protein (.1) Lus10016737 [exp] 374 / 3e-118 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 371 / 4e-117 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 359 / 4e-113 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10039725 [exp] 345 / 1e-107 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10014387 [exp] 238 / 3e-68 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10032741 [exp] 232 / 3e-65 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 228 / 1e-63 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097100 [exp] 491 / 6e-164 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.004G096900 [exp] 444 / 6e-145 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 442 / 1e-144 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.017G118100 [exp] 441 / 2e-143 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.017G118250 [exp] 428 / 6e-139 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.015G044750 [exp] 387 / 1e-123 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G045101 [exp] 375 / 6e-119 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G054725 [exp] 374 / 2e-118 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 368 / 2e-116 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.010G120800 [exp] 369 / 1e-115 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10028494 pacid=23166158 polypeptide=Lus10028494 locus=Lus10028494.g ID=Lus10028494.BGIv1.0 annot-version=v1.0 ATGATATTCCGTTATCCTGCATCCACCTTCTCCTGCGTTCTCATCTTCTCAATCTTGATCACAATCAGTAGTAGCTCCGCGCAAGACGATGAATACTTGG CTTGCAGCAGGCAGATCGAATGTGGAGACAACCGTTTCGATTTCCCCTTTTGGGGATCCGGTCGTCCTAGATATTGCGGCCTCCCGGAATTCGAACTCAC TTGCGATGACTCTAATGCCAATATCTCCATCTCAGGCATCACTTTCCAGATACTCGACATCAACGACAACTCCCGGATCCTAAGGCTTAGGCAGACCGAT TACGAAGGAGATCTCTGTCCCGCTGATCCCCGGAACGTCACCGCCATTGAGGATCTGTTGTTCACAGGGGAGACTCAATTCGTGAATCTTTACTACGGTT GCTCGGTGCGATCGCCCGGACTTCAACTCCCCTCGAGTCTCGGGGAGTACAGTTGCCCCATCAGCCAATCAGGAAGGGGATTCTTTCTGCCGATGACGGA GAGCATACTCGGCCAATATGAACCCGCAGTTAGGAACTGGTTGGGAGGATGCAACAATCAAGTTAGGGTTCCGGTAAATGGAACGGCTCTGGAGGTGCTG CAGAGCGACCCGACGTTTGCAAGGTTAACTGAGGCAATTGATCAAGGTTTTGGGATGCAATGGACAGCGAACGACACTTTGTGCTCCACCTGTAGACTCT CAGGTGGGAAGTGCGGATTCAATGATACGACGAGGTCGTTCACTTGCTATTGCGTTGATCAGCCGTATGGAGAGGAATGTCCTTCTACAGCAGCTGGTCC GGCACCTCAACCTGCAATGTACCCTCTCCTCCTCCTCCTCCTCCTTTTCTGTTCATCCGCCGCCGCCTCCTTACCGGCCGATGGCAATCTCTCTGGCTGC AACAACACCTTCTCCTGCGGCAACATAACAAACATCGAGTTCCCTTTCACCGGCGGTCCACGTCCCCACTACTGCGGCTTGCCAGGTTTCAATCTCACAT GTCAAGACGACTCCATCACTCTCCTCACCATTAACTCCCTCAACTACACCGTCCTCCACATCGACGGCTCCGATTCAACCTTGACCCTCTCCCGCTCCGA CTTGTCCTCCTCCTCCTCCTCCGCGGGATGCACCAACCTCCACCGCAACTCAACTTTTTCGAACTCCAACTTCACCGTCTCCCCTAACGCCCATATCCTC ACACTTTTCTACTCCTGCAACTACACTTCCTCTGCCTACGACTATAACCCTCCCAACCTTTTCTACTGCGACGACGATGGAGGGAGATTGAGGCCTGGGA TTTATATGGTCGGTGAGGTCCCCGATGTCGTTGGCTCGATTCAGTCAATGTGTGGTAGCTCCGTTACTGTACCGATTTCGGGAGCATACTCTGGGATTAT GAGTAACGGCTCTTTGCTTGCCCCTGCTTTGAGAGCTGGGTTTAATGTGAATTATAGTGATCCTATGGATGATGATTGCTTCAATTGCTTTTTTGAGAGG CATGGATACTGTGGGTTTGATGATGACTCTGGTGAATCTATCTGTATCTGCGGGGATCGGCTTTGTCCAGGACTATCAGCAGGAGCAGGAGTTGTTGCAG CGATCGGCATATGTGTCTGGTTCTTGATTTCGAGGCAGAGGAAAAGAAAAGCAGCACAGATCATGAGCAAAGATTCATCCACACCGCCATCTTCCACAGC CAAAACCCGAACCACCCGCACAACCAACAAATACTCCAACACCACTTCTTCCTCCTACACCACATCAATGTCCGACATCGAAAAGGGAGGACCCGGCGGC AGCACCTACTTCGGCGTCCAGGTTTTCAGCTACGACGAACTCGACGAAGCCACCGAGAGCTTCGACGCTTCCAAAGAGCTGGGAGACGGCGGCTTCGGCA CCGTCTACTACGGCGAGCTCGAAGACGGTAGAGCCGTCGCCGTCAAGAGACTGTACGAGAACAACATGAGAAGAACAGAGCAGTTCATGAACGAAATCGA AATACTCGCCAAGCTCCGACACAAAAACTTAGTCACATTATACGGCTGCACCTCCCGCCATAGCAGGGAGCTTGTCCTTGTCTACGAGTACATCTCCAAC GGCACCGTAGCAGATCACCTCCACGGCAACCGACGCGAATCTGGCACGAATATGATGACGTGGCGGGTGAGGATGAACATCGCAATCCAGGCGGCCGACG CGCTGTCGTTCCTCCACGCGTCTGACGTCATCCACCGAGATGTGAAAACGAACAATGTCTTACTCGACGAAAATTTCAACGTCAAAGTTGCTGACTTCGG TTTGTCCAGGCTGTTCCCACTCCACGTCACCCACGTATCCACGGCCCCACAGGGGACACCTGGCTACGTGGACCCGGAGTACTACCAATGCTACCAGCTG ACGGACAAGAGCGACGTGTACAGCTTCGGAGTGGTGCTGATGGAGCTGATAACGTCCTTACAGGCGGTGGACACGGGTAGGCACCGCCACGACATCAATT TGGCCAACATGGCGGGGCGAACATGGCGGTGA
AA sequence Show only first row Show all	>Lus10028494 pacid=23166158 polypeptide=Lus10028494 locus=Lus10028494.g ID=Lus10028494.BGIv1.0 annot-version=v1.0 MIFRYPASTFSCVLIFSILITISSSSAQDDEYLACSRQIECGDNRFDFPFWGSGRPRYCGLPEFELTCDDSNANISISGITFQILDINDNSRILRLRQTD YEGDLCPADPRNVTAIEDLLFTGETQFVNLYYGCSVRSPGLQLPSSLGEYSCPISQSGRGFFLPMTESILGQYEPAVRNWLGGCNNQVRVPVNGTALEVL QSDPTFARLTEAIDQGFGMQWTANDTLCSTCRLSGGKCGFNDTTRSFTCYCVDQPYGEECPSTAAGPAPQPAMYPLLLLLLLFCSSAAASLPADGNLSGC NNTFSCGNITNIEFPFTGGPRPHYCGLPGFNLTCQDDSITLLTINSLNYTVLHIDGSDSTLTLSRSDLSSSSSSAGCTNLHRNSTFSNSNFTVSPNAHIL TLFYSCNYTSSAYDYNPPNLFYCDDDGGRLRPGIYMVGEVPDVVGSIQSMCGSSVTVPISGAYSGIMSNGSLLAPALRAGFNVNYSDPMDDDCFNCFFER HGYCGFDDDSGESICICGDRLCPGLSAGAGVVAAIGICVWFLISRQRKRKAAQIMSKDSSTPPSSTAKTRTTRTTNKYSNTTSSSYTTSMSDIEKGGPGG STYFGVQVFSYDELDEATESFDASKELGDGGFGTVYYGELEDGRAVAVKRLYENNMRRTEQFMNEIEILAKLRHKNLVTLYGCTSRHSRELVLVYEYISN GTVADHLHGNRRESGTNMMTWRVRMNIAIQAADALSFLHASDVIHRDVKTNNVLLDENFNVKVADFGLSRLFPLHVTHVSTAPQGTPGYVDPEYYQCYQL TDKSDVYSFGVVLMELITSLQAVDTGRHRHDINLANMAGRTWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	0	1
AT5G38210			Protein kinase family protein ...		Lus10028495 [exp]	1.0	0.9900
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	2.0	0.9773
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	2.0	0.9841
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	3.0	0.9795
					Lus10002555 [exp]	5.0	0.9769
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	5.5	0.9719
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	6.0	0.9762
					Lus10031841 [exp]	7.3	0.9753
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	9.5	0.9739
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023900 [exp]	9.8	0.9695

Compare expression of checked genes

Lus10028494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.