Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16200 61 / 6e-12 50S ribosomal protein-related (.1) AT1G66890 50 / 5e-08 unknown protein AT1G68430 46 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009148 [exp] 218 / 1e-73 AT5G16200 81 / 2e-19 50S ribosomal protein-related (.1) Lus10034103 [exp] 62 / 4e-12 AT1G68430 68 / 6e-15 unknown protein Lus10003042 [exp] 49 / 1e-07 AT1G68430 66 / 3e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G117866 [exp] 94 / 6e-25 AT5G16200 72 / 1e-16 50S ribosomal protein-related (.1) Potri.004G097200 [exp] 86 / 6e-22 AT1G66890 / unknown protein Potri.010G121300 [exp] 68 / 1e-14 AT1G68430 79 / 5e-19 unknown protein Potri.008G123800 [exp] 48 / 1e-07 AT1G68430 54 / 2e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028496 pacid=23165955 polypeptide=Lus10028496 locus=Lus10028496.g ID=Lus10028496.BGIv1.0 annot-version=v1.0 ATGGCCACGCTGCAGAAATTCAAGCATTTCGCAACTCAGTGCGGAGCTGGGAATCCGACGCAGAGCCCCACCACCAGCCCAGTCTTCCACCTCCGCCGCC ACCACCACAGCCGCCGCCGCAACACCCTCCGTATGCTCCTCTCCCGCGGCGGCACTCCAGACCACCACCGCCGGGCTATGGCGATGTTCGATTCGCCTCC CCGAAATGTCTGCGACAATCAGATCGTCCAGCAGCGGGATCTGCCGGCAGCAGAGTCGCACAGGGCCAGAAGAAAATTGAAGGATTTGTTCGTTTCTTCT TCTCCGCCTTTTGATGATCATCGGAAGCAGAATCGGGGCTGCGATGAGGTCAGGCTGTTGACTGACGGCAGTACTGAGAGTAATAGTAGCGGCGGTGGCG GAGGAGGATTGTCGGGTCGTCGGAGTGGGCTAAGACCGGTGGCGGCGAGATTTCGGTGTAGGTTAATGAGGAGAGCTTGGCGGCCTGTACTTGTCACCAT CCCTGAATAG
AA sequence Show only first row Show all	>Lus10028496 pacid=23165955 polypeptide=Lus10028496 locus=Lus10028496.g ID=Lus10028496.BGIv1.0 annot-version=v1.0 MATLQKFKHFATQCGAGNPTQSPTTSPVFHLRRHHHSRRRNTLRMLLSRGGTPDHHRRAMAMFDSPPRNVCDNQIVQQRDLPAAESHRARRKLKDLFVSS SPPFDDHRKQNRGCDEVRLLTDGSTESNSSGGGGGGLSGRRSGLRPVAARFRCRLMRRAWRPVLVTIPE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16200			50S ribosomal protein-related ...		Lus10028496 [exp]	0	1
AT2G47590		PHR2	photolyase/blue-light receptor...		Lus10007880 [exp]	1.7	0.8820
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025245 [exp]	2.2	0.8931
AT1G80310		MOT2	molybdate transporter 2, sulfa...		Lus10038286 [exp]	6.9	0.8630
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10014033 [exp]	7.5	0.8889
AT3G22970			Protein of unknown function (D...		Lus10003087 [exp]	7.9	0.8628
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	13.1	0.8803
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10034499 [exp]	15.9	0.8526
AT5G62140			unknown protein		Lus10015008 [exp]	15.9	0.8737
AT2G21180			unknown protein		Lus10007573 [exp]	19.8	0.8718
AT2G44600			unknown protein		Lus10019505 [exp]	20.1	0.8527

Compare expression of checked genes

Lus10028496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.