Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38220 410 / 6e-144 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 352 / 4e-122 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 318 / 3e-107 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 314 / 5e-106 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 311 / 8e-105 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 301 / 1e-100 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G31020 280 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 273 / 6e-91 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 250 / 7e-81 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G32190 251 / 2e-80 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017617 [exp] 449 / 6e-159 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 424 / 2e-149 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10022307 [exp] 309 / 2e-103 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 299 / 7e-100 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035148 [exp] 299 / 1e-99 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 294 / 1e-97 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040038 [exp] 284 / 7e-95 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018081 [exp] 300 / 4e-94 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10000544 [exp] 282 / 3e-93 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G117633 [exp] 454 / 2e-161 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 442 / 8e-157 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.015G087100 [exp] 337 / 1e-114 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G340000 [exp] 337 / 1e-114 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 328 / 1e-111 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G112300 [exp] 311 / 2e-104 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 306 / 1e-102 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 303 / 6e-101 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 296 / 2e-98 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G188100 [exp] 280 / 1e-93 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028497 pacid=23166056 polypeptide=Lus10028497 locus=Lus10028497.g ID=Lus10028497.BGIv1.0 annot-version=v1.0 ATGGGCGGAGTCACCTCGTCAATTGCAGCCAAATTCGCCTTCTTCCCTCCAACTCCGCCGTCTTACACTGTCGTAGCAGCCGACGACTCCAACGGAAAGT TGTCCATACCGGAGGCGGCGAGGAGGGATGGCATGGATGTCCTGAAGCTCCGCACTCGACGAGGTAACGAAATCGTGGCCGTCCATATTAAGCATCCCAG AGCTTCCGCTACCCTGCTCTATTCCCATGGGAATGCTGCTGACTTGGGACAGATGCTCGATCTCTTTGTCCAGCTCAGCAACCGACTTCGGATTAACCTC ATGGGCTATGATTATTCTGGTTATGGACGGTCAAGTGGGAAGCCAACCGAATATAACACATATGCGGACATAGACGCTGCCTACAAGTGCCTCAAGGAGC AGTACGGAGTCAAAGACGAAGAACTGATATTGTACGGACAGTCTGTTGGTAGTGGACCTACTGTTGATCTTGCTTCACGTTTGCCAACTCTAAGGGGTGT GGTTCTCCACAGTCCACTTCTCTCCGGGATGAGGGTATTGTACCCTGTCAAAAGAACATACTGGTTCGACATTTACAAGGGAACAGCAGATGAAGTTGTG GCTTGCTCTCACGGGATGCGACTCTGGGAACTCAGCAAAAACAAATACCAACCTTTATGGATAAGTGGAGGCCGACACTGCAACCTCGAACTTTACCCAG ATTTCATAAGGCATCTCAAGAAGTTCGTGTCCTCGCTTGGTAAATCTACTAAAGCAGCAAATGGCGATTCTGATAAGGCAGCAACATCTTCAGAATCGGA GAGCACGAATAAACCGTCAGAAACGACCAAGAGAGGTGCGGATTCGTTGGAAGTAGTAGCGGACCTGCCTCAAGTATCGAGGAACAGTTTAGACAGCCGA CTGGAGAAGTCTAAGAAGAACAATTGGAGTAAACTCGAGAAATCTCGATTGAGCACTGACATTGTTGATAGATTTAGAAGGAAAGGTCGCTTAGTCTGGT GA
AA sequence Show only first row Show all	>Lus10028497 pacid=23166056 polypeptide=Lus10028497 locus=Lus10028497.g ID=Lus10028497.BGIv1.0 annot-version=v1.0 MGGVTSSIAAKFAFFPPTPPSYTVVAADDSNGKLSIPEAARRDGMDVLKLRTRRGNEIVAVHIKHPRASATLLYSHGNAADLGQMLDLFVQLSNRLRINL MGYDYSGYGRSSGKPTEYNTYADIDAAYKCLKEQYGVKDEELILYGQSVGSGPTVDLASRLPTLRGVVLHSPLLSGMRVLYPVKRTYWFDIYKGTADEVV ACSHGMRLWELSKNKYQPLWISGGRHCNLELYPDFIRHLKKFVSSLGKSTKAANGDSDKAATSSESESTNKPSETTKRGADSLEVVADLPQVSRNSLDSR LEKSKKNNWSKLEKSRLSTDIVDRFRRKGRLVW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10028497 [exp]	0	1
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10020182 [exp]	5.5	0.7912
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	6.0	0.7994
AT4G21510			F-box family protein (.1)		Lus10022370 [exp]	8.2	0.7929
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	11.4	0.7860
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	13.0	0.7764
AT4G00290			Mechanosensitive ion channel p...		Lus10005121 [exp]	17.1	0.7738
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10018061 [exp]	21.2	0.7408
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10007254 [exp]	21.8	0.7537
AT1G08860		BON3	BONZAI 3, Calcium-dependent ph...		Lus10033826 [exp]	26.3	0.7424
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	28.5	0.7630

Compare expression of checked genes

Lus10028497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.