Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02580 213 / 2e-69 BUL1, DWF7, STE1 DWARF 7, BOULE 1, sterol 1 (.1) AT3G02590 195 / 1e-62 Fatty acid hydroxylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009147 [exp] 300 / 1e-103 AT3G02580 439 / 1e-157 DWARF 7, BOULE 1, sterol 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G116600 [exp] 223 / 1e-73 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1) Potri.004G097500 [exp] 221 / 7e-73 AT3G02580 464 / 3e-167 DWARF 7, BOULE 1, sterol 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028498 pacid=23166153 polypeptide=Lus10028498 locus=Lus10028498.g ID=Lus10028498.BGIv1.0 annot-version=v1.0 ATGACGGCGGTGGACTATCTGCAGCAATTCGTTGACGATACCACATTCTTCAACAACATAGTGTTGGGGAATCTGCTGCCTTCTTCCTGGTGGAAGGATC CACTTCCTCACTTCCTCCAGACCTGGCTCCGCAATTACATCGCCGGAAATCTCCTCTACCTCGTCTCTGGCTTCCTCTGGTGCTTCTACATCTACTACCT CAAGCGCAACGTCTTCCTTCCCAAAGATGCTATACCTTCCAATGACGCGATGCTCAAGCAAATTTATGTTGCTATGAAAGCAATGCCATGGTACACTCTT CTACCAACTGACACTCTTCTGCCAACTGTTTCCGAGTACATGGTTGAGAATGGCTGGACTAAGTGCTATCCCGGAATACTTGAGTTCGGTTTGGTTCCGT ACCTTGCGTACATGGCAATTTACCTCGTCTTCGTCGAGTTTGGGATTTACTGGATGCACAGGGAGTTGCACGACATAAAACCTCTGTACAAGTACCCACC CCCACCACCACCACTACTTGATGCAGTTCTATGGTTGTTCATTCTGTTGCGAGCTCAGATTCCGATTTTCTGTGATTGA
AA sequence Show only first row Show all	>Lus10028498 pacid=23166153 polypeptide=Lus10028498 locus=Lus10028498.g ID=Lus10028498.BGIv1.0 annot-version=v1.0 MTAVDYLQQFVDDTTFFNNIVLGNLLPSSWWKDPLPHFLQTWLRNYIAGNLLYLVSGFLWCFYIYYLKRNVFLPKDAIPSNDAMLKQIYVAMKAMPWYTL LPTDTLLPTVSEYMVENGWTKCYPGILEFGLVPYLAYMAIYLVFVEFGIYWMHRELHDIKPLYKYPPPPPPLLDAVLWLFILLRAQIPIFCD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	0	1
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023779 [exp]	1.4	0.8732
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Lus10032195 [exp]	2.8	0.8348
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Lus10040930 [exp]	2.8	0.8558
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10009147 [exp]	3.2	0.8325
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10027368 [exp]	4.5	0.8470
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	4.6	0.8600
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	4.9	0.8423
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	5.3	0.8603
AT5G62960			unknown protein		Lus10014556 [exp]	7.3	0.7972
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	8.8	0.8385

Compare expression of checked genes

Lus10028498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.