Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38100 155 / 9e-45 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G37990 157 / 1e-44 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38780 155 / 1e-44 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G37970 152 / 6e-43 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G44840 146 / 2e-41 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G68040 145 / 7e-41 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G66700 140 / 4e-39 PXMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.3) AT3G44870 139 / 2e-38 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G44860 136 / 2e-37 FAMT farnesoic acid carboxyl-O-methyltransferase (.1) AT1G66720 135 / 4e-37 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021802 [exp] 113 / 3e-29 AT1G68040 203 / 6e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10043177 [exp] 102 / 1e-24 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10036550 [exp] 101 / 3e-24 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032569 [exp] 99 / 1e-23 AT5G55250 400 / 2e-139 IAA carboxylmethyltransferase 1 (.1.2) Lus10041380 [exp] 97 / 1e-22 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 95 / 6e-22 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 95 / 2e-21 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 87 / 3e-19 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041776 [exp] 86 / 1e-18 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G122950 [exp] 188 / 5e-57 AT1G15125 321 / 4e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122000 [exp] 187 / 6e-57 AT5G37970 327 / 7e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122900 [exp] 180 / 3e-54 AT1G15125 295 / 5e-98 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122700 [exp] 180 / 4e-54 AT5G38780 322 / 2e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G121800 [exp] 171 / 1e-50 AT5G37990 327 / 8e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G104800 [exp] 166 / 8e-49 AT1G68040 328 / 4e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G041900 [exp] 159 / 2e-45 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136300 [exp] 157 / 3e-45 AT1G68040 379 / 7e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016102 [exp] 156 / 7e-45 AT1G68040 315 / 6e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016112 [exp] 155 / 1e-44 AT1G68040 319 / 2e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028500 pacid=23166115 polypeptide=Lus10028500 locus=Lus10028500.g ID=Lus10028500.BGIv1.0 annot-version=v1.0 ATGGCGGAAGTGATGCTTACAGCTATTCTCAAAACTCTACCTACCAGGAGCGTGTTGGAAACTGTGAAGCAACTGATCCAAGAATCCATCAAAACCCAAA TCGACATCAACTCCCTAACTGGTTCTACCAACCCGATTTTCAGGATAGCCGATTTCGGGTGTTCGGTAGGACCAAACACATTCATCTTGGTACAGAACAT CTTGGATGCAGTCCGACTGAAAAACCAAGCATCCAAAACACCCATAGACGACCTAGAGTTCAAAGTCTTCTTCAACGACCAGACCAACAACGACTTCAAC ACCCTCTTCAGCTCTCTTCCGGCGTCACACCAAAAGGAAATTAACTACTTCGCTGCCGGGGTACCAGGTAGCTTCCACGGCCGCATTTTCCTCAAGGGGA GCCTCTATTTCGGGTGCATCGCCTCCTCGATCCACTGGCTCTCCCGGGTTCCTCCGGAAATAATTACAAATGGAGGGAGCAGCAAAATCATTCAGTGCAC GGGATTTGATGAAGATGTCGGGGAGGCCTACTCGGCTCAGTTCTCGAGAGACATGGACGCTTTCTGTGATGCCAGGGCTCAAGAGATTGTCACCGGAGGT TTGATGGCTATTTTGGCGATTTGTTTGCCTGACGACGGTGGAGCCCTTTGGTCCAACACTGGGTTGGAAGACAAGCTGGAGAGTTTCTACTTGCCGGAGC ACTATTGCAATGCTGAAGAGCTGGGAGTACTAATTTCGAACAAAGGATGCTTCAGCATACAAAAGGTTGAGAGAATGTCACCTAGCCTACCATGGAAGTC CCCGGAAATAATCCAGCGTATGGTCCTGCACATGCGAGCCGCACTCAAGAAACTCATCACGCACCACTTTGAGATCACTGCCCCAAACACTGTGGATTGT TATTTGTGA
AA sequence Show only first row Show all	>Lus10028500 pacid=23166115 polypeptide=Lus10028500 locus=Lus10028500.g ID=Lus10028500.BGIv1.0 annot-version=v1.0 MAEVMLTAILKTLPTRSVLETVKQLIQESIKTQIDINSLTGSTNPIFRIADFGCSVGPNTFILVQNILDAVRLKNQASKTPIDDLEFKVFFNDQTNNDFN TLFSSLPASHQKEINYFAAGVPGSFHGRIFLKGSLYFGCIASSIHWLSRVPPEIITNGGSSKIIQCTGFDEDVGEAYSAQFSRDMDAFCDARAQEIVTGG LMAILAICLPDDGGALWSNTGLEDKLESFYLPEHYCNAEELGVLISNKGCFSIQKVERMSPSLPWKSPEIIQRMVLHMRAALKKLITHHFEITAPNTVDC YL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37990			S-adenosyl-L-methionine-depend...		Lus10028500 [exp]	0	1
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	3.0	0.9263
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10011141 [exp]	3.5	0.8953
AT3G17180		SCPL33	serine carboxypeptidase-like 3...		Lus10037810 [exp]	5.2	0.8731
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	7.1	0.9144
					Lus10011947 [exp]	8.7	0.8640
AT4G04750			Major facilitator superfamily ...		Lus10000924 [exp]	8.8	0.9033
AT3G58360			TRAF-like family protein (.1)		Lus10012948 [exp]	10.4	0.9131
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10029430 [exp]	11.2	0.8913
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	12.8	0.9080
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10026376 [exp]	13.1	0.8520

Compare expression of checked genes

Lus10028500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.