Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 391 / 2e-136 SAG12 senescence-associated gene 12 (.1) AT3G48340 369 / 2e-127 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G19390 371 / 6e-127 Granulin repeat cysteine protease family protein (.1) AT5G50260 366 / 2e-126 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48350 347 / 1e-118 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT5G43060 350 / 2e-118 Granulin repeat cysteine protease family protein (.1) AT4G35350 346 / 2e-118 XCP1 xylem cysteine peptidase 1 (.1.2) AT2G27420 343 / 2e-117 Cysteine proteinases superfamily protein (.1) AT1G20850 342 / 6e-117 XCP2 xylem cysteine peptidase 2 (.1) AT3G19400 341 / 3e-116 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028502 [exp] 664 / 0 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10020730 [exp] 662 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 657 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 656 / 0 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10020734 [exp] 653 / 0 AT5G45890 390 / 4e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 653 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 652 / 0 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10003275 [exp] 649 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10029799 [exp] 647 / 0 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089100 [exp] 545 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 544 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 536 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 535 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 535 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 531 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 501 / 5e-180 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 474 / 1e-169 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 471 / 2e-168 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 470 / 1e-167 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10028501 pacid=23166071 polypeptide=Lus10028501 locus=Lus10028501.g ID=Lus10028501.BGIv1.0 annot-version=v1.0 ATGGCTACAACCAATAGAAATCTCATTCTCTTGGTTTCCATATTCATCCTGGGAGCTCTGGCTTCTCACGCCACGGCACGCTATACATTTTCTGAAGCTT CCATGCGCCTCAGGTACGAGAAATGGATGGCTCGTTATGGACGAGTCTACGACAGTTCCACTGAAAAGGAGGCTCGCTTTCGAATCTTTAAAGACAATGT AGCCTTCATTGACTCTTCCAATGCTGCTGGAGACAAGTCTTACACGCTTGGAGTCAATCAGTTTGCCGATTTGACTAACGACGAGTTCAAAGCCTCTAGA AACGGGTTCAAGGGGCACATGTGCTCCCCGCAACATGGACCTTTTAGGTATGAAAATGTGAGTGCGGTCCCGACGACCATGGACTGGAGGAAGAAGGGAG CGGTCACTCCTATCAAAGACCAAGGTCAATGCGGAAGCTGCTGGGCATTTTCGGCTGTGGGAGCAATGGAAGGAATCCACCAGCTCAGTACTGGCAAATT GGCGTCCCTTTCGGAGCAAGAATTGGTCGACTGCGACACCAAGGGAGAGGACCAAGGATGCAGCGGCGGGTTGATGGATGATGCGTTCAAGTTCATCATT CAAAACAAGGGCTTGACCACCGAGACGAACTACCCTTACGATGCTGCCGACGGAACATGTAATGCTAACAAAGAAGGCAGCAGTGCAGCCAAGATTACCG GGTACGAAGATGTGCCAGCCAACAACGAGGCCGCATTGATGAAGGCAGTAGCGAGCCAACCTATTTCGGTTGCCATTGATGCAGGGGATTCGTCGTTCCA ATTCTACTCGAGTGGAATATTCACCGGTGAATGCGGGACTGAGCTAGACCATGGAGTGACTGCAGTTGGGTATGGAGAGAGCGGTGGGAAGAAGTACTGG TTGGTGAAGAATTCGTGGGGAGCGCAGTGGGGCGAAGCCGGATACATTCGAATGGAGAAAGACGTTACCGCTAAAGAAGGTCTCTGCGGAATCGCTATGC AGGCTTCCTATCCTACTGCCTAA
AA sequence Show only first row Show all	>Lus10028501 pacid=23166071 polypeptide=Lus10028501 locus=Lus10028501.g ID=Lus10028501.BGIv1.0 annot-version=v1.0 MATTNRNLILLVSIFILGALASHATARYTFSEASMRLRYEKWMARYGRVYDSSTEKEARFRIFKDNVAFIDSSNAAGDKSYTLGVNQFADLTNDEFKASR NGFKGHMCSPQHGPFRYENVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLASLSEQELVDCDTKGEDQGCSGGLMDDAFKFII QNKGLTTETNYPYDAADGTCNANKEGSSAAKITGYEDVPANNEAALMKAVASQPISVAIDAGDSSFQFYSSGIFTGECGTELDHGVTAVGYGESGGKKYW LVKNSWGAQWGEAGYIRMEKDVTAKEGLCGIAMQASYPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028501 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028502 [exp]	1.0	0.9415
AT4G28940			Phosphorylase superfamily prot...		Lus10034939 [exp]	5.7	0.8671
AT3G25400			unknown protein		Lus10020407 [exp]	8.4	0.8736
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	11.5	0.8642
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	12.0	0.8447
AT2G14095			unknown protein		Lus10025500 [exp]	17.0	0.8908
AT3G18570			Oleosin family protein (.1)		Lus10017992 [exp]	18.7	0.8679
AT5G38760			Late embryogenesis abundant pr...		Lus10003046 [exp]	19.2	0.8898
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002356 [exp]	23.2	0.8764
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10031766 [exp]	25.7	0.8371

Compare expression of checked genes

Lus10028501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.