Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17380 874 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT3G48560 144 / 2e-36 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) AT5G54960 45 / 0.0002 PDC2 pyruvate decarboxylase-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009141 [exp] 1061 / 0 AT5G17380 908 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10029955 [exp] 141 / 2e-35 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10016751 [exp] 127 / 9e-31 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035207 [exp] 113 / 1e-26 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022445 [exp] 71 / 1e-13 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022446 [exp] 71 / 7e-13 AT3G48560 702 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032041 [exp] 55 / 8e-08 AT3G48560 565 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 51 / 9e-07 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10005048 [exp] 51 / 2e-06 AT5G54960 1067 / 0.0 pyruvate decarboxylase-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G094600 [exp] 917 / 0 AT5G17380 904 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.015G097200 [exp] 146 / 5e-37 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.012G098300 [exp] 143 / 4e-36 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL0085 [flax] [poplar] FAD_DHS PF00205 [flax] [poplar] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain
Representative CDS sequence Show only first row Show all	>Lus10028503 pacid=23166188 polypeptide=Lus10028503 locus=Lus10028503.g ID=Lus10028503.BGIv1.0 annot-version=v1.0 ATGGCCGAATCCAATCCGGTGAACCCCGCCGCCGACTCAATCGTCGACGGAAACTTGCTCGCCGCCAAATCCTTCGCCCGCTGCGGCGTCAAGCACATGT TCGGCGTCGTCGGCGTTCCGGTCACTTCCCTTGCTAACCGCGCCGTCTCTCTCGGAGTTCGTTTCTTCGCCTTCCACAACGAGCAGTCGGCAGGATACGC CGCCTCCGCCTACGGCTACCTCACAGGCCGCCCTGGCTTGCTTCTCACAGTTTCCGGCCCGGGTTGCGTCCACGGGCTCGCCGGAATGTCGAACGCCATG GCGAACACTTGGCCCATGGTTATGATCTCCGGCTCGTGTGATCAGAAGGATGCTGGTCGAGGGGATTTCCAGGAGCTGGACCAGCTGGAAGCTGTGAAGC CCTTCTCCAAATTCTCGGTGAAGGCAAAACACATAAAGGATATACCTAAGTGCGTAGTCCAGGTTCTTGATTGGGCTGTTTCCGGCCGTCCTGGTGGGTG CTACTTGGATCTTCCTACTGACGTCCTGCATCAGACGGTATCAGAATCGGAGGCTGAAGAATTGTTGATTTCTGCAGTAGATCGGACATCAATTGAGAAG AGAAACGAAGTTAAGAGTACGGAAATCCAAAAAGCAGTGGATTTGCTGAGGAAAGCGGAAAGGCCGTTGATCGTGTTTGGGAAAGGAGCAGCTTATGCTC GAGCAGAGGAGGAGCTAAAGAAGCTGGTGGATAGAACTGGAATACCGTTTCTACCGACCCCGATGGGGAAAGGATTGCTCCCGGATACGCACGAGCTGGC AGCAAGTGCGGCGAGGTCCCTCGCGATCGGGAAATGCGACGTGGCGGTCGTGGTTGGTGCGAGGCTGAATTGGCTGTTGCATTTCGGGGAGCCGCCGAAA TGGGCTAGGGATGTCAAGTTCATCTTGGTGGATGTGTGTAAAGATGAGATTGAACTTAGGAAACCTCATTTAGGTCTAGTTGGGGATGCCAAACGGGTGT TGGAGTTGCTTAACGTTGGGATCAAAGATAATCCATTTTGTTTTGCGAGGACTCATCCTTGGGTTGATGCGATTTCGAAGAAGGTGAAGGAGAATGTATC GAGGATGGATGCTCAGTTGGCGAAGGAAGTTGTGCCGTTTAATTTCTTGACGCCGATGAGGATTATTAGGGATGCGATTTCGGAGATGGGGAGTCCTGCT CCGGTAGTGGTTTCGGAAGGTGCTAATACGATGGATGTGGGAAGATCTGTGTTGGTGCAGACGGAGCCAAGGACTCGATTGGATGCCGGGACATGGGGGA CGATGGGAGTTGGGTTGGGTTATTGCATTGCTGCTGCAGTTGCTGAGCCTGATAGACTAGTGGTTGCAGTTGAAGGCGACTCCGGATTCGGTTTCAGTGC CATGGAAGTTGAGACCTTGGTACGGTACCAGTTGCCAGTAGTTGTAATAGTTTTCAACAATGGAGGTGTATATGGAGGAGATAGGAGGAGGCCAGATGAA ATAACAGGGCCCTTCAAGGATGATCCAGCACCCACATCATTTGTCCCTTCGGCTGGGTACCATCTGCTAATCGAAGCATTCGGGGGCAAAGGCTACCTTG TCGGGGCGCCCGATGAGCTTCGTTCTGCACTTAAAGAATCTTTCTCTGCTCGAAAGCCTGCAGTTATTAATGTTACCATTGATCCTTTTGCTGGTGCTGA AAGTGGTAGGATGCAGCACAAGAATTGA
AA sequence Show only first row Show all	>Lus10028503 pacid=23166188 polypeptide=Lus10028503 locus=Lus10028503.g ID=Lus10028503.BGIv1.0 annot-version=v1.0 MAESNPVNPAADSIVDGNLLAAKSFARCGVKHMFGVVGVPVTSLANRAVSLGVRFFAFHNEQSAGYAASAYGYLTGRPGLLLTVSGPGCVHGLAGMSNAM ANTWPMVMISGSCDQKDAGRGDFQELDQLEAVKPFSKFSVKAKHIKDIPKCVVQVLDWAVSGRPGGCYLDLPTDVLHQTVSESEAEELLISAVDRTSIEK RNEVKSTEIQKAVDLLRKAERPLIVFGKGAAYARAEEELKKLVDRTGIPFLPTPMGKGLLPDTHELAASAARSLAIGKCDVAVVVGARLNWLLHFGEPPK WARDVKFILVDVCKDEIELRKPHLGLVGDAKRVLELLNVGIKDNPFCFARTHPWVDAISKKVKENVSRMDAQLAKEVVPFNFLTPMRIIRDAISEMGSPA PVVVSEGANTMDVGRSVLVQTEPRTRLDAGTWGTMGVGLGYCIAAAVAEPDRLVVAVEGDSGFGFSAMEVETLVRYQLPVVVIVFNNGGVYGGDRRRPDE ITGPFKDDPAPTSFVPSAGYHLLIEAFGGKGYLVGAPDELRSALKESFSARKPAVINVTIDPFAGAESGRMQHKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17380			Thiamine pyrophosphate depende...		Lus10028503 [exp]	0	1
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10011506 [exp]	1.0	0.8475
AT2G17990			unknown protein		Lus10028465 [exp]	3.9	0.8018
AT5G17380			Thiamine pyrophosphate depende...		Lus10009141 [exp]	8.5	0.8287
AT1G80630			RNI-like superfamily protein (...		Lus10041648 [exp]	9.6	0.7424
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	9.8	0.8229
AT1G56150			SAUR-like auxin-responsive pro...		Lus10031178 [exp]	11.1	0.7281
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10010963 [exp]	12.3	0.7791
AT1G67340			HCP-like superfamily protein w...		Lus10037021 [exp]	19.1	0.7606
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	23.9	0.7574
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	25.7	0.7581

Compare expression of checked genes

Lus10028503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.