Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64820 477 / 2e-165 MATE efflux family protein (.1) AT1G66780 451 / 2e-155 MATE efflux family protein (.1) AT2G04100 449 / 7e-155 MATE efflux family protein (.1) AT1G66760 447 / 7e-154 MATE efflux family protein (.1.2) AT2G04080 435 / 3e-149 MATE efflux family protein (.1) AT2G04040 434 / 7e-149 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04090 432 / 3e-148 MATE efflux family protein (.1) AT2G04050 431 / 2e-147 MATE efflux family protein (.1) AT2G04070 427 / 3e-146 MATE efflux family protein (.1) AT1G71140 426 / 1e-145 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009140 [exp] 810 / 0 AT1G64820 560 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 450 / 7e-155 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 431 / 1e-147 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10042732 [exp] 431 / 2e-147 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 427 / 6e-146 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10006171 [exp] 417 / 2e-140 AT1G71140 452 / 5e-154 MATE efflux family protein (.1) Lus10018135 [exp] 407 / 2e-138 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10000619 [exp] 399 / 2e-134 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 405 / 9e-132 AT1G15170 537 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G120600 [exp] 523 / 0 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.004G094900 [exp] 523 / 0 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.017G120500 [exp] 509 / 1e-178 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G094800 [exp] 506 / 1e-177 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.017G120400 [exp] 504 / 1e-176 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.010G116900 [exp] 460 / 5e-159 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 443 / 4e-152 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 439 / 5e-151 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.008G126500 [exp] 436 / 2e-149 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.004G094700 [exp] 415 / 3e-141 AT2G04100 425 / 3e-145 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10028504 pacid=23166058 polypeptide=Lus10028504 locus=Lus10028504.g ID=Lus10028504.BGIv1.0 annot-version=v1.0 ATGGAGAATGTTGATGCTCCGCTCCTCCTTCAAAAGAAGGTACTATATGATGAAGCAGAGGTCGTCACCGTCAAGAATAATCCAAATAGAGGAGAAGAAA GTGTGTTGGTGGAACAGCTGAAGAAGGTGATCAAAATGGCTGCTCCTATGGTAGTAGTCTCCGTCGCTCAGTACCTTGTCCAGGTCGTCTCGTTGATCAT GTCCGGCCACCTCGGAGAGCTGTCCCTCTCTGCCGTTGCCGTCGCCACCTCCTTCACCAACGTCACCGGCTTCGCCCTCCTTTTCGGGCTAGCGGGAGCG TTGGAGACGCTATGCGGGCAAGCGTACGGAGCAGAGCAGTACTGGAAATGTGGGACATACTCATACTCGGCCATGATCACCCTCCTCCTGATCTGCATCC CCATATCGATCCTTTGGTTCTTCCTCGACAAGCTCCTCGTATCAATCGGTCAAGACCCCGACATCTCTCGAGAGGCCTGCCGATACGCGATAAGCTTGAT CCCCGCTCTGTTCGGGGATGCCATATTGCAGTCTCTAAACCGATACTTCCAGTCGCAAGGATTGACTCTGCCCTTGCTTTTGAGCTCCGTCGCTGCTTTG TGTGTTCATGTTCCGATGTGTTGGGCCCTGTCTTATAAGTGTGGGCTCGGGAATATTGGGGCTGCTTTTTCTATTGGGCTGGCTTATTGGTTTAATGCTG TTTTGCTTGTCTGTTACATGCGATGGTCTTGTTCGTGTGAGAAGACACGTGTCATGTGTTGGGACGATGTGGTGGCGAGTGTCGGGGAGTTTTGGAGATT CGCCGTTCCTTCTGCTGTCATGGTCTGTCTGGAATGGTGGACGTTTGAGCTACTGGTTCTACTGGCTGGGTTGCTACCAAATGCAGCTCTGGAAACATCA GTTCTTTCAATTTGCCTAACGACCACATCGCTTCACTACTATGTACAATACGGGATCGGCTCTGCTGCCAGCACCGGAGTGTCGAACGAGCTGGGAGCAG GGAACCCAGAGAAGGCGAAAGCAGTGATAAAATCGGCGGTGGCAATCTCGATAACCGAGGCCGTCGTCGTCAGCACGACGTTGTTCTGCTGCCGGAGCTT CTTCGGCTACATATTCAGCAACGAAAGAGAAGTGGTGGAATACGTGAGTGACGTGGCTCCTCTGCTCTGCATGTCCGTCATCGTGGACAGCTCTCTTGCA GTACTCTCCGGCGTGGCTCGCGGGAGCGGGTGGCAGCATATAGGCGCGTACGTAAATCTAGGCGCGTACTATGGGATCGGGATGCCCGTGGCGGTGGTGA TGTGCTTCGTGGTGCGTCTCAACGGGGAAGGGCTCTGGATTGGGATACTCACGGCGTCTACTCTTCAGGCCGTTTTGTTCGCTTCCGTTACTGTTTTCAC TAATTGGGATCAAGAGGCGAGCAAGGCCCGGGAGAGGATATTTGACGGAAGTCGGTCGTCGTCTCAAACAATTTTGCCTGCTTGA
AA sequence Show only first row Show all	>Lus10028504 pacid=23166058 polypeptide=Lus10028504 locus=Lus10028504.g ID=Lus10028504.BGIv1.0 annot-version=v1.0 MENVDAPLLLQKKVLYDEAEVVTVKNNPNRGEESVLVEQLKKVIKMAAPMVVVSVAQYLVQVVSLIMSGHLGELSLSAVAVATSFTNVTGFALLFGLAGA LETLCGQAYGAEQYWKCGTYSYSAMITLLLICIPISILWFFLDKLLVSIGQDPDISREACRYAISLIPALFGDAILQSLNRYFQSQGLTLPLLLSSVAAL CVHVPMCWALSYKCGLGNIGAAFSIGLAYWFNAVLLVCYMRWSCSCEKTRVMCWDDVVASVGEFWRFAVPSAVMVCLEWWTFELLVLLAGLLPNAALETS VLSICLTTTSLHYYVQYGIGSAASTGVSNELGAGNPEKAKAVIKSAVAISITEAVVVSTTLFCCRSFFGYIFSNEREVVEYVSDVAPLLCMSVIVDSSLA VLSGVARGSGWQHIGAYVNLGAYYGIGMPVAVVMCFVVRLNGEGLWIGILTASTLQAVLFASVTVFTNWDQEASKARERIFDGSRSSSQTILPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64820			MATE efflux family protein (.1...		Lus10028504 [exp]	0	1
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10038158 [exp]	1.7	0.9261
AT1G23070			Protein of unknown function (D...		Lus10036614 [exp]	8.5	0.9201
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10034031 [exp]	9.5	0.9064
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	9.7	0.9081
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10008608 [exp]	11.6	0.9119
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	15.6	0.9091
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017600 [exp]	15.8	0.8984
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10006930 [exp]	16.8	0.7651
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	18.0	0.8904
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10042829 [exp]	18.0	0.8780

Compare expression of checked genes

Lus10028504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.