Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16715 1520 / 0 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT1G14610 620 / 0 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT5G49030 137 / 1e-32 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT4G10320 125 / 5e-29 tRNA synthetase class I (I, L, M and V) family protein (.1) AT4G04350 88 / 2e-17 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G27160 59 / 1e-09 valyl-tRNA synthetase / valine--tRNA ligase-related (.1) AT1G09620 49 / 2e-05 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009139 [exp] 1299 / 0 AT5G16715 1128 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10033331 [exp] 619 / 0 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10034788 [exp] 613 / 0 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10041706 [exp] 159 / 2e-39 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10024041 [exp] 159 / 3e-39 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10043413 [exp] 155 / 2e-38 AT5G49030 1570 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10034171 [exp] 154 / 4e-38 AT5G49030 1530 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10015552 [exp] 66 / 1e-10 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10024704 [exp] 47 / 6e-05 AT1G09620 1696 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G124500 [exp] 1629 / 0 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.007G004100 [exp] 632 / 0 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.005G087850 [exp] 618 / 0 AT1G14610 1503 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.004G090732 [exp] 531 / 0 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.010G014500 [exp] 155 / 2e-38 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G033200 [exp] 120 / 2e-27 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.004G090666 [exp] 96 / 2e-23 AT5G16715 80 / 9e-19 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.007G126501 [exp] 93 / 4e-19 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.011G009600 [exp] 66 / 9e-11 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.004G090766 [exp] 59 / 2e-10 AT5G16715 44 / 3e-06 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [flax] [poplar] DALR PF08264 [flax] [poplar] Anticodon_1 Anticodon-binding domain of tRNA ligase CL0298 [flax] [poplar] tRNA_bind_arm PF10458 [flax] [poplar] Val_tRNA-synt_C Valyl tRNA synthetase tRNA binding arm
Representative CDS sequence Show only first row Show all	>Lus10028505 pacid=23166009 polypeptide=Lus10028505 locus=Lus10028505.g ID=Lus10028505.BGIv1.0 annot-version=v1.0 ATGGCTTTCTTATACAGTCCTTCCCTTCTATCTTCTTCCCCTGTTGCTCACACACTCAAGTTCAATCCTTTTCTTCTCTCCAAGCGCCGCACTCCTCTCC CCACCTTCTCTCAATGCCGTCGTCCTACTTCATTCATCTCTCCCTGGCAATTCACCACTCACCTCCGCCCAAGCTTCTTAGCAGCTGTATCCGAGAATGG AGGGTTTACCTCTCCTGAGTTGGCCAAGTCCTTCGATTTCTCTGCTGAGGAACGGATTTACAAATGGTGGGAGTCACAAGGGTACTTCAAGCCATCCTTT GATCGAGGGAGTGATCCATTTGTAATATCGATGCCGCCTCCCAACGTTACTGGGTATCTGCATATGGGGCATGCCATCTTTGTCACTCTCGAGGATATCA TGGTGAGATACCATCGTATGAAGGGGAGACCAACCTTGTGGATTCCTGGATCAGATCATGCTGGGATTGCAACTCAGCTGGTTGTAGAGAAAATGCTTCA AAGTGAAGGACTGAAGAGGACTGAAGTGGGGAGAGAGAAATTTACAGAGCGTGTATGGGAGTGGAAAGAAAAACATGGTGCCAGAATCACAAATCAAATT AAAAGACTGGGTGCTTCCTGCGACTGGACCAGAGAGCACTTTACCCTTGATGAGCAGCTAAGTCGAGCCGTGGTAGAAGCTTTTATCAAGCTTCATGACA AAGGCTTAATCTATCAAGGTTCTTACCTGGTAAACTGGTCCCCCAATCTACAGACTGCAGTTTCAGACTTGGAAGTTGAATATTCTGAAGAACCCGGCAC TCTATATTATATCAAATATCGTGTTGCTGGAGGTACAAGGAGTGACTTCTTAACAATAGCAACAACTCGGCCGGAAACTTTATTTGGTGATGTCGCCGTC GCAGTGAATCCAAATGATGATCGCTATTCCAAATACATTGGGCAAATGGCGATTGTGCCTATGACATACGGTCGCCATGTGCCTATCATTGCTGATAAGT ATGTTGATAAGGAGTTTGGGACCGGCGTATTGAAGATAAGTCCTGGACATGATCATAATGATTATCTTCTTGCTCGAAAGCTTGGTCTCCCAATACTTAA TGTGATGAATAAAGATGGGACTCTTAATGATGTTGCTGGACTGTACAGTGGTCTTGATCGATTTGAGGCTCGAAAGAAACTCTGGTCAGAACTTGAGGAG ACAAACTTAGCTGTGAAAAAGGAGGCCCATACCTTAAGAGTTCCCAGATCCCAGCGTGGTGGAGAGATAATAGAACCATTGGTGAGTAAGCAGTGGTTTG TGAACATGGAATCTCTGGCTGAGAAGGCCCTTCATGCAGTTCAAAAAGGAGAAATAACCATAATGCCTGAAAGATTTGAGAAGCTTTGGTGGGGTCACCG CATACCTGTTTGGTACGTTGAAGGGAGAAGTGGCGAAGAGGACTATATAATTGCTAGGGATGAAGGTGAAGCCCTGGAGAAAGCTCGTGCAAAATATGGA GAACGTGTGGAAATATATCAAGATCCAGATGTTCTTGACACATGGTTTTCAAGTTCACTATGGCCTTTTAGCACTCTTGGATGGCCTGACGAGTCATCAG AAGATTACAAGAGGTTCTATCCAACAACAACGCTCGAAACTGGGCATGATATTTTGTTCTTCTGGGTAGCAAGGATGGTTATGATGGGAATCGAGCTTAC TGGGAAAGTTCCATTTTCAAATATTTATCTTCATGGACTTATTCGAGATGCACAAGGGAGAAAAATGTCTAAAACACTGGGGAATGTAATTGATCCTCTG GATACAATCAAGGAGTATGGCACTGATGCTTTACGATTCACTCTTGCTCTGGGAACTGCTGGACAGGATCTTAATTTGTCGATGGAGAGATTGACTGCTA ATAAAGCATTTACTAACAAACTATGGAATGCGGGGAAGTTTGTGTTGCAGAACTTGCCTAGTCAGACTGATTCATTTGCTTGGGAAGCTATAGTTGCTCA TAAGTTTGATGCAGAGGAGTCGCTTCTCAGGCTACCTTTACCAGAATGCTGGGTGGTCTCGAAACTTCACTCGCTCATAGACACCGTGACTGCAAGCTAT GACAAATATTTCTTTGGAGACGTGGGAAGAGAAATCTATGATTTCTTCTGGAGTGATTTTGCCGATTGGTACATTGAAGCCAGTAAAGCTCGGCTATACC AGTCAGGAGAGGAATCAACTGCTTCCGTGGCACAGGCAGTTCTATTATATGTTTTCGAAAATATTTTAAAAATGCTTCATCCCTTCATGCCGTTTGTTAC CGAAGAGCTTTGGCAGGCTCTCCCTGATCGGAAAGAGGCTCTCATAATATCTTCATGGCCCCAGACTGCTCTTCCACGACATGCTAGCTCAATAAGGCAA TTTGAAAATTTTCAAGCTTTAACTAGAGCAATCCGAAATGTTCGAGCAGAATATTCTGTGGAGCCTGCCAAACGTATTTCTGCATCTATAGTTGCCAACA AAGACGTTGTCCAGTATATCTCTAATGAGAAGGAAGTTTTGGCTCTACTTTCCCGGCTCGATTTGCAAAATGTCCATTTCTCCACGTCTCCTCCAGGGGA TGCAAATAAATCTGTACACATTGTTGCTAGTGAAGGGCTGGAAGCTTATCTCCCACTTGCTGATATGGTCGATATATCTGCTGAAGTTGAACGCCTTTCC AAGCGACTTTCAAAGATGCAGACCGAGTACGAGGGTCTTGTTGCCCGGCTCAATTCTTCCAAATTTGTAGAGAAAGCACCGGAGGATGTTGTCCGTGGAG TTAGAGAAAAAGCAGCAGAGGCAGAAGAGAAGATCAACCTGACAAAGAACCGGCTTGATTTTCTGAGGTCTTCTGCATTGATATCACAACAATAG
AA sequence Show only first row Show all	>Lus10028505 pacid=23166009 polypeptide=Lus10028505 locus=Lus10028505.g ID=Lus10028505.BGIv1.0 annot-version=v1.0 MAFLYSPSLLSSSPVAHTLKFNPFLLSKRRTPLPTFSQCRRPTSFISPWQFTTHLRPSFLAAVSENGGFTSPELAKSFDFSAEERIYKWWESQGYFKPSF DRGSDPFVISMPPPNVTGYLHMGHAIFVTLEDIMVRYHRMKGRPTLWIPGSDHAGIATQLVVEKMLQSEGLKRTEVGREKFTERVWEWKEKHGARITNQI KRLGASCDWTREHFTLDEQLSRAVVEAFIKLHDKGLIYQGSYLVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGGTRSDFLTIATTRPETLFGDVAV AVNPNDDRYSKYIGQMAIVPMTYGRHVPIIADKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNDVAGLYSGLDRFEARKKLWSELEE TNLAVKKEAHTLRVPRSQRGGEIIEPLVSKQWFVNMESLAEKALHAVQKGEITIMPERFEKLWWGHRIPVWYVEGRSGEEDYIIARDEGEALEKARAKYG ERVEIYQDPDVLDTWFSSSLWPFSTLGWPDESSEDYKRFYPTTTLETGHDILFFWVARMVMMGIELTGKVPFSNIYLHGLIRDAQGRKMSKTLGNVIDPL DTIKEYGTDALRFTLALGTAGQDLNLSMERLTANKAFTNKLWNAGKFVLQNLPSQTDSFAWEAIVAHKFDAEESLLRLPLPECWVVSKLHSLIDTVTASY DKYFFGDVGREIYDFFWSDFADWYIEASKARLYQSGEESTASVAQAVLLYVFENILKMLHPFMPFVTEELWQALPDRKEALIISSWPQTALPRHASSIRQ FENFQALTRAIRNVRAEYSVEPAKRISASIVANKDVVQYISNEKEVLALLSRLDLQNVHFSTSPPGDANKSVHIVASEGLEAYLPLADMVDISAEVERLS KRLSKMQTEYEGLVARLNSSKFVEKAPEDVVRGVREKAAEAEEKINLTKNRLDFLRSSALISQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	0	1
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	1.4	0.9721
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	2.8	0.9544
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	3.5	0.9555
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10034171 [exp]	4.1	0.9270
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	4.9	0.9483
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	5.2	0.9547
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039467 [exp]	5.9	0.9465
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	6.3	0.9525
AT4G18130		PHYE	phytochrome E (.1)		Lus10004593 [exp]	7.1	0.9370
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031160 [exp]	7.9	0.9422

Compare expression of checked genes

Lus10028505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.