Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 110 / 1e-28 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 109 / 2e-28 Terpenoid synthases superfamily protein (.1) AT3G14530 102 / 1e-25 Terpenoid synthases superfamily protein (.1) AT3G14510 100 / 1e-25 Polyprenyl synthetase family protein (.1) AT2G23800 100 / 6e-25 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT3G14550 98 / 3e-24 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT2G18640 96 / 2e-23 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G20160 95 / 6e-23 Terpenoid synthases superfamily protein (.1) AT3G29430 94 / 8e-23 Terpenoid synthases superfamily protein (.1) AT3G32040 90 / 4e-21 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009136 [exp] 165 / 3e-52 AT2G18620 177 / 1e-55 Terpenoid synthases superfamily protein (.1) Lus10033582 [exp] 167 / 7e-52 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 166 / 6e-50 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 164 / 4e-49 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 165 / 9e-49 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 163 / 1e-48 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 147 / 1e-42 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 147 / 2e-42 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009137 [exp] 109 / 2e-30 AT4G36810 131 / 2e-37 geranylgeranyl pyrophosphate synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090600 [exp] 142 / 7e-41 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 137 / 9e-39 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 128 / 2e-35 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 115 / 2e-30 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 111 / 4e-29 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G179628 [exp] 78 / 8e-17 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.009G139600 [exp] 77 / 1e-16 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.015G043400 [exp] 57 / 2e-09 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10028506 pacid=23166096 polypeptide=Lus10028506 locus=Lus10028506.g ID=Lus10028506.BGIv1.0 annot-version=v1.0 ATGGGACATCCTGATTTCAGGAACTCAGGAGTTGAGTTGCTATGTACAAATCAGCCTGAGAATGAATACATGATTTCCAAGATCAACCGAGTGGACAAGG CTCTTGAAAATTCCATTCTCCTTCGCCACCCTCTCAAAATCCACGAGGCAATCCTCTACTCCCTCTTTGCCGGAGGGAAGTGGGTCCGTCCAGTCCTCTG CATTGCCGCCTGCGAGATGTTCGGCGGTAATGAATCGCTTGCGATGCCAACGGCCTGCGCTGCAGAGATGGTCCACACCATGTCTCGCAAGGAAGTGAGT TTGGAGGAATTGGAGTATATGCAAATCTACAAATCAACGAGGCTGGTGGAGACGGCGGTGGTGTGTGGTGTGATTATCAGTGGAGCGGATGATGAGAGTT TGGAGAAGTTGAGGAACTATTCGAGGTGTGTGGGGTTACTGATCCAGGTTGTTGATGATATTCAGGGCGTTGCGAAGGATGTTGTTATCGATAAGGCAAC GTATCTGAAACTCCTGGGATTGGATGGTGCCAGGAGATCCGCGTTCGAGTTGGTCGATGAAGCTAATAAGAAATTGAGTGATTTTGATCCTATCAAGGCC GCACCTCTCTACCACTATGCTAATTATGTTGCTACTCTACAAGGCTAA
AA sequence Show only first row Show all	>Lus10028506 pacid=23166096 polypeptide=Lus10028506 locus=Lus10028506.g ID=Lus10028506.BGIv1.0 annot-version=v1.0 MGHPDFRNSGVELLCTNQPENEYMISKINRVDKALENSILLRHPLKIHEAILYSLFAGGKWVRPVLCIAACEMFGGNESLAMPTACAAEMVHTMSRKEVS LEELEYMQIYKSTRLVETAVVCGVIISGADDESLEKLRNYSRCVGLLIQVVDDIQGVAKDVVIDKATYLKLLGLDGARRSAFELVDEANKKLSDFDPIKA APLYHYANYVATLQG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028506 [exp]	0	1
AT5G04347			Plant self-incompatibility pro...		Lus10029375 [exp]	6.6	0.6137
AT5G48540			receptor-like protein kinase-r...		Lus10030777 [exp]	9.4	0.6137
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	11.5	0.6137
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	13.3	0.6137
					Lus10012269 [exp]	14.8	0.6137
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10023434 [exp]	15.7	0.5473
					Lus10035508 [exp]	16.2	0.6137
					Lus10021893 [exp]	16.7	0.6135
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	17.5	0.6137
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	18.8	0.6137

Compare expression of checked genes

Lus10028506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.