Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 337 / 4e-114 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 326 / 3e-110 Terpenoid synthases superfamily protein (.1) AT2G23800 289 / 1e-95 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT3G20160 287 / 3e-95 Terpenoid synthases superfamily protein (.1) AT3G14550 287 / 9e-95 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT3G14530 286 / 2e-94 Terpenoid synthases superfamily protein (.1) AT2G18640 276 / 3e-90 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G29430 274 / 8e-90 Terpenoid synthases superfamily protein (.1) AT3G32040 271 / 1e-88 Terpenoid synthases superfamily protein (.1) AT3G14510 262 / 3e-86 Polyprenyl synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009138 [exp] 493 / 9e-176 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 441 / 3e-155 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 422 / 7e-148 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 398 / 2e-138 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 396 / 2e-136 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 336 / 1e-113 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 333 / 1e-112 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 293 / 2e-99 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10025096 [exp] 196 / 8e-60 AT4G38460 381 / 5e-133 geranylgeranyl reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090600 [exp] 380 / 3e-131 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 358 / 4e-123 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 348 / 6e-119 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 336 / 6e-114 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 333 / 7e-113 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.009G139600 [exp] 211 / 1e-65 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.004G179628 [exp] 209 / 2e-64 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.015G043400 [exp] 86 / 6e-19 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 86 / 2e-18 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.010G138800 [exp] 63 / 1e-10 AT2G34630 551 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10028507 pacid=23166078 polypeptide=Lus10028507 locus=Lus10028507.g ID=Lus10028507.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCCTTCTCTCTAACTAATTCAACCATCTCTTCTCCTCCTCATCTGAATGTCATCTTCAACGACGTTAAAATTATCAAAAAATCCC AATCTCCACAACCACAATCCAAGCTCCTCCCTCTCAAACTCCGCGCTTCCTCTGTTTCTCCCCTGCATCATCACCATCATCATCATGAACATAATAAGCC CAATCTCCCCGATTTCAATTTCCGGGAATATATGTTTTGCAAGGTCAACCGAGTGAACAAGGCTCTGGAAGAGGCCATCCCACTCCGCCACCCTCTCAAA GTCTATGAGGCAATGCGCTACTCCCTCCTCGCCGGCGGCGAGAGGGTCCGTTCGGTCCTCTGCATTGCCGCCTGCGAGATGTTCGGAGGGGATGAATCGC TTGCGATGCCGATGGCATGTGCCGCCGAGATGATCCACACCATGTCCCTTATGCACGACGACCTCCCCTGTATAGACAACGACGACTTTCGCCGTGGAAA GCCCACCAACCACAAGAAGTTCGGCGAGAATACAACTCTTCTCGCTGGTGATGCCCTCCTCTCCTTCGCCTTCGAGCACTTGGCCACCCAAGCCTTGAAA AATGTCCCGCCCGAGCGAATTCTCCTAACGATTGCCGAGCTTGGATCAGCTGCGGGGGGCGCCGGAATCGTCGCCGGTCAGTTTGTCGACATAGCCAGCG AAGGCAAGAAAGTGAGTTTGGAGGAAGTGAAGTACATACACACCCACAAGACTGCGAAGCTAGTGGAGGCGGCGGCGGTTTGCGGTGCGGTTATCGGCGG AGCGGATGACGAGAGCGTGAAGAGGTTGAGGAAGTACTCGAGGTGTGTGGGATTGTTAGGCCAGATAATGGACGATATACTGAATGTGACGGGCTCGTCG GAGCAGTTGGAAAAGACCACCGACAAGGATCTTGCTAGCAATAAGGCGGCGTATCCCAACCTGTTGGGTCTAAATGGTGCCAAGAAGTTGGCCATGGAGT TGGTGGATGAAGCCAATAAAGAGTTGGTTGGATTTGATCCTCTTAAGACTGCACCTCTCTATTATTATGCTAATTACATCGCTATTAGACAAAACTAA
AA sequence Show only first row Show all	>Lus10028507 pacid=23166078 polypeptide=Lus10028507 locus=Lus10028507.g ID=Lus10028507.BGIv1.0 annot-version=v1.0 MASSSSFSLTNSTISSPPHLNVIFNDVKIIKKSQSPQPQSKLLPLKLRASSVSPLHHHHHHHEHNKPNLPDFNFREYMFCKVNRVNKALEEAIPLRHPLK VYEAMRYSLLAGGERVRSVLCIAACEMFGGDESLAMPMACAAEMIHTMSLMHDDLPCIDNDDFRRGKPTNHKKFGENTTLLAGDALLSFAFEHLATQALK NVPPERILLTIAELGSAAGGAGIVAGQFVDIASEGKKVSLEEVKYIHTHKTAKLVEAAAVCGAVIGGADDESVKRLRKYSRCVGLLGQIMDDILNVTGSS EQLEKTTDKDLASNKAAYPNLLGLNGAKKLAMELVDEANKELVGFDPLKTAPLYYYANYIAIRQN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028507 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021045 [exp]	12.9	0.8801
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	20.7	0.8774
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028508 [exp]	24.2	0.8323
AT5G51310			2-oxoglutarate (2OG) and Fe(II...		Lus10009025 [exp]	27.2	0.8582
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Lus10027899 [exp]	29.0	0.8670
AT1G61050			alpha 1,4-glycosyltransferase ...		Lus10011206 [exp]	30.4	0.8745
					Lus10025963 [exp]	40.0	0.8730
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	59.5	0.8644
AT4G11290			Peroxidase superfamily protein...		Lus10027163 [exp]	60.2	0.8533
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	60.5	0.8616

Compare expression of checked genes

Lus10028507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.