Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 358 / 1e-122 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 357 / 1e-122 Terpenoid synthases superfamily protein (.1) AT3G14530 322 / 1e-108 Terpenoid synthases superfamily protein (.1) AT3G14550 320 / 1e-107 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT2G23800 314 / 4e-105 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT2G18640 311 / 5e-104 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G29430 310 / 9e-104 Terpenoid synthases superfamily protein (.1) AT3G20160 306 / 2e-102 Terpenoid synthases superfamily protein (.1) AT3G32040 299 / 1e-99 Terpenoid synthases superfamily protein (.1) AT3G14510 296 / 2e-99 Polyprenyl synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028509 [exp] 463 / 5e-164 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 454 / 2e-160 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 447 / 1e-157 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 442 / 7e-156 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 439 / 6e-153 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 353 / 2e-120 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 342 / 5e-116 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 324 / 2e-111 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10025096 [exp] 218 / 2e-68 AT4G38460 381 / 5e-133 geranylgeranyl reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090600 [exp] 428 / 3e-150 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 401 / 1e-139 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 387 / 3e-134 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 365 / 2e-125 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 361 / 1e-123 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.009G139600 [exp] 224 / 2e-70 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.004G179628 [exp] 222 / 9e-70 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 99 / 1e-22 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.015G043400 [exp] 89 / 1e-19 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.011G099500 [exp] 69 / 9e-13 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10028508 pacid=23166048 polypeptide=Lus10028508 locus=Lus10028508.g ID=Lus10028508.BGIv1.0 annot-version=v1.0 ATGGCTTCTTATTCTTCCTTCTCGCTAACTAATTCAACCATCTCTTCTCCTCCTCAACTGAATAAACCCATGATCATCTTCAACAACGTTAACAAAATTA TCAACAAATCACAATACTCCAAGCTCCTCCCACTCAAACTCCGCGCTTCCTCTGTTTCTCCCCTGTATTGTCGTCATGAACATTATAAACCCAACCTCGC CGCAGCAGTCACTCTTTCCGATTTCAACTTTCAGGAATACATGATTGGCAAGATGAACCGAGTGAACGAGGCTCTAGATGAGGCCATCCCCCTCCGCCAT CCTGTCAAAATCTACGAGGCAATGCGCTACTCCCTCCTCGCTGGCGGCAAGCGGGTCCGTCCAGTCATCTGCATTGCCGCCTGCGAGATGTTTGGAGGCG ATGAATCGCTTGCGATGCCGATGGCCTGCGCCACCGAGATGATCCACACTATGTCCCTTATCCTCGACGACCTCCCTTGTATGGACAACGACGACATGCG TCGTGGCCTCCCTACTAACCACAAGAAATACGGCGAGGACACTACTGTCCTCGCCGGTGTGGCCCTCCACTCCTTGGCTTTTGAGCACTTGGTCACCCGA ACCCCCAAAACCGTACCGCTAGAGCGTCTTTTCCGAACGGTTGCCGAGCTTGGATCAGCTTCGGGTGCCGACGGATTAATGGCCGGCCAACTTGTCGACA TCGCTAGCGAAGGCAAGGAAGTGAGTTTGGAGGAGCTGGAGTATATACACGTCCAAAAGACTGCAAAGCTAGCGGAGGCGGCGGTGGTGTGCGGTGCGAT TATCGGAGGAGCGGACGAGGAGAGCGTGGAAAAATTGAGGAAGTACTCAAGGTATGTGGGATTGATGGGCCAGATTGTGGACGATATATTGGACGTGACG GGCTCGTCGGAGCAGTTGGGAAAGACCGCCGGCAAGGATATTGCTAGCGACAAGGCCACGTATCCGAAATTGTTGGGCCTGGATGGTGCCAGGAAGTTGG CCATGGAGCTGGTGGATGAAGGCAATAGGCAGTTGGCTGGATTTGATCCTGTTAAGGCCGCACCTCTTTACCATTATGCTAATTACATTGCTACTCGACA AAACTAG
AA sequence Show only first row Show all	>Lus10028508 pacid=23166048 polypeptide=Lus10028508 locus=Lus10028508.g ID=Lus10028508.BGIv1.0 annot-version=v1.0 MASYSSFSLTNSTISSPPQLNKPMIIFNNVNKIINKSQYSKLLPLKLRASSVSPLYCRHEHYKPNLAAAVTLSDFNFQEYMIGKMNRVNEALDEAIPLRH PVKIYEAMRYSLLAGGKRVRPVICIAACEMFGGDESLAMPMACATEMIHTMSLILDDLPCMDNDDMRRGLPTNHKKYGEDTTVLAGVALHSLAFEHLVTR TPKTVPLERLFRTVAELGSASGADGLMAGQLVDIASEGKEVSLEELEYIHVQKTAKLAEAAVVCGAIIGGADEESVEKLRKYSRYVGLMGQIVDDILDVT GSSEQLGKTAGKDIASDKATYPKLLGLDGARKLAMELVDEGNRQLAGFDPVKAAPLYHYANYIATRQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028508 [exp]	0	1
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10042214 [exp]	1.0	0.8899
					Lus10026703 [exp]	3.9	0.8428
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026236 [exp]	6.2	0.8129
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	23.4	0.8444
AT3G09925			Pollen Ole e 1 allergen and ex...		Lus10023887 [exp]	23.4	0.7266
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	23.5	0.8491
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10002661 [exp]	23.7	0.8431
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028507 [exp]	24.2	0.8323
					Lus10033372 [exp]	25.0	0.8378
AT2G36380		ABCG34, PDR6, A...	ATP-binding cassette G34, plei...		Lus10023879 [exp]	51.7	0.8068

Compare expression of checked genes

Lus10028508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.