Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 414 / 1e-144 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 400 / 1e-139 Terpenoid synthases superfamily protein (.1) AT2G23800 362 / 4e-124 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT2G18640 352 / 3e-120 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G14530 352 / 5e-120 Terpenoid synthases superfamily protein (.1) AT3G14550 345 / 1e-117 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT3G20160 343 / 6e-117 Terpenoid synthases superfamily protein (.1) AT3G29430 333 / 4e-113 Terpenoid synthases superfamily protein (.1) AT3G14510 324 / 2e-110 Polyprenyl synthetase family protein (.1) AT3G32040 324 / 3e-109 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017624 [exp] 523 / 0 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 499 / 3e-178 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 476 / 8e-169 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 448 / 8e-158 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 446 / 3e-157 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 405 / 8e-141 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 402 / 2e-139 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 392 / 7e-138 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009136 [exp] 261 / 9e-88 AT2G18620 177 / 1e-55 Terpenoid synthases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090600 [exp] 472 / 2e-167 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 434 / 2e-152 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 431 / 3e-151 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 416 / 3e-145 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 408 / 2e-142 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.009G139600 [exp] 244 / 3e-78 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.004G179628 [exp] 241 / 5e-77 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 116 / 7e-29 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.015G043400 [exp] 97 / 1e-22 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.011G099500 [exp] 91 / 7e-20 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10028509 pacid=23166159 polypeptide=Lus10028509 locus=Lus10028509.g ID=Lus10028509.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCCTTCTCTACAGCTTCAACCATCTCTTCTTCTCATCTTCAACACTCCAAATTCGCTCTCCTCAAAAGACCCTTCATCTTCAACAACA ACCCATCCAATCCCAAATCCCAATTACCCCAATTCAAACTCCGCATTTCCGCCGCCGCCGCCGGATCATCAGCATCCTCTGTCTCTCCCCTGCAATTCGC CGACCAAACCTCCCCCGCCACTCCTCTCCCCGATTTCGATTTCGGGGAGTACATGATCACCAAGGCCGAGCGGGTCAACAAGGCCCTCGAGGAGGCGATT CCGCTTCAGCGTCCGATCAAAATCCACGAGGCGATGAGGTACTCCCTCCTCGCCGGCGGCAAGCGCGTCCGTCCTGTACTCTGTATCGCCGCCTGCGAGA TGGTCGGCGGCGACGACTCGATCGCAATGCCAATGGCCTGCGCCACTGAGATGATCCACACCATGTCCCTCATCCACGACGACCTCCCCTGCATGGACAA CGACGATCTCCGCCGCGGCGTCCCTACTAATCACAAGAAGTACGGCGAGGACACTGCTATCCTCGCCGGCGATGCCCTCCTCTCCTTCTCCTTCGAGCAC GTCGCCGCCCAGACCCCTAAAACTGTCTCTCCGGAGCGAATCGTCCGATCGATCGCCGAGCTTGGATCCGCCGTTGGGGCTGCTGGACTTGTCGCCGGCC AGATTGTCGACATCGCCAGCGAAGGCGAGAAAGTGACTTTGGAGGACTTGGAGTACATCCACATCCACAAGACGGCGAGGCTGCTAGAGGCGGCGGTGGT TTGCGGAGCCATCCTGGGCGGAGCCGACGATGAGAGCGTGGAGAAGGTGAGGAAATACTCGAGGTGCGTAGGATTACTATTCCAAGTGGTGGACGATATT CTTGACGTGACGAAGTCGTCGGAGGAGCTGGGGAAGACCGCCGGGAAGGATCTGGCGACGGACAAGGCGACGTATCCAAAGCTGTTGGGTTTGGACGGCG CGAGGAAGTTCGCGGCCAAATTGGTGGATGAAGCCAATAAGGAGTTGGCCGGATTTGATCCTGTTAAGGCGGCCCCTCTTCATCATTTTGCTAATTACAT TGCTACCAGACAAAATTAA
AA sequence Show only first row Show all	>Lus10028509 pacid=23166159 polypeptide=Lus10028509 locus=Lus10028509.g ID=Lus10028509.BGIv1.0 annot-version=v1.0 MASSSFSTASTISSSHLQHSKFALLKRPFIFNNNPSNPKSQLPQFKLRISAAAAGSSASSVSPLQFADQTSPATPLPDFDFGEYMITKAERVNKALEEAI PLQRPIKIHEAMRYSLLAGGKRVRPVLCIAACEMVGGDDSIAMPMACATEMIHTMSLIHDDLPCMDNDDLRRGVPTNHKKYGEDTAILAGDALLSFSFEH VAAQTPKTVSPERIVRSIAELGSAVGAAGLVAGQIVDIASEGEKVTLEDLEYIHIHKTARLLEAAVVCGAILGGADDESVEKVRKYSRCVGLLFQVVDDI LDVTKSSEELGKTAGKDLATDKATYPKLLGLDGARKFAAKLVDEANKELAGFDPVKAAPLHHFANYIATRQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028509 [exp]	0	1
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	1.4	0.9946
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	2.8	0.9913
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10016962 [exp]	4.2	0.9904
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	4.2	0.9921
AT4G10950			SGNH hydrolase-type esterase s...		Lus10032399 [exp]	5.6	0.9825
					Lus10040445 [exp]	5.7	0.9895
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	5.7	0.9926
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037205 [exp]	7.3	0.9850
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	8.7	0.9907
AT1G78780			pathogenesis-related family pr...		Lus10029763 [exp]	8.8	0.9881

Compare expression of checked genes

Lus10028509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.