Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16710 352 / 1e-120 DHAR3 dehydroascorbate reductase 1 (.1) AT1G19570 273 / 3e-90 DHAR5, DHAR1, ATDHAR1 DEHYDROASCORBATE REDUCTASE 5, dehydroascorbate reductase (.1.2) AT1G75270 261 / 1e-85 DHAR2 dehydroascorbate reductase 2 (.1) AT1G19550 164 / 8e-49 Glutathione S-transferase family protein (.1) AT2G04070 77 / 8e-15 MATE efflux family protein (.1) AT2G04050 75 / 3e-14 MATE efflux family protein (.1) AT2G04080 74 / 7e-14 MATE efflux family protein (.1) AT2G04040 74 / 8e-14 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT1G71140 72 / 3e-13 MATE efflux family protein (.1) AT1G15170 69 / 3e-12 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009135 [exp] 526 / 0 AT5G16710 372 / 5e-130 dehydroascorbate reductase 1 (.1) Lus10023441 [exp] 263 / 1e-86 AT1G75270 327 / 3e-115 dehydroascorbate reductase 2 (.1) Lus10040320 [exp] 265 / 2e-83 AT1G75270 320 / 4e-108 dehydroascorbate reductase 2 (.1) Lus10023442 [exp] 249 / 4e-81 AT1G75270 317 / 5e-111 dehydroascorbate reductase 2 (.1) Lus10009132 [exp] 130 / 8e-33 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10008911 [exp] 78 / 2e-15 AT1G71140 430 / 1e-147 MATE efflux family protein (.1) Lus10004899 [exp] 77 / 6e-15 AT1G15170 474 / 2e-166 MATE efflux family protein (.1) Lus10028540 [exp] 76 / 3e-14 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 76 / 3e-14 AT1G15170 542 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125100 [exp] 384 / 5e-133 AT5G16710 389 / 4e-138 dehydroascorbate reductase 1 (.1) Potri.008G049300 [exp] 280 / 3e-93 AT1G75270 340 / 2e-120 dehydroascorbate reductase 2 (.1) Potri.010G211600 [exp] 206 / 4e-65 AT1G75270 253 / 5e-87 dehydroascorbate reductase 2 (.1) Potri.004G093400 [exp] 101 / 4e-23 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 87 / 3e-18 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.010G117000 [exp] 83 / 8e-17 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 79 / 2e-15 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 79 / 2e-15 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.019G075800 [exp] 75 / 2e-14 AT1G71140 407 / 2e-139 MATE efflux family protein (.1) Potri.017G120500 [exp] 74 / 4e-14 AT2G04100 468 / 3e-162 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028510 pacid=23165958 polypeptide=Lus10028510 locus=Lus10028510.g ID=Lus10028510.BGIv1.0 annot-version=v1.0 ATGAGAGCAGCGTTTGCTGCCGTTGGACAGTTCTTTTGGATTGGACTCTCCTCTCCTGTCATGGTCTGTCTAAAATGGTGGTCGATGGAATTGCTGACTC TGCTTTCTGTGTTTATGTCCAATCCAAAGCTGGAGACCTCTGTTCTTTCTATATGCTTATCAATATCCACTCGGCACTTCACCATACCCTACGGATTCGG AGCTGCTGTAAGACGCAGCAGCATTCGGAGAACCCTCACATTTGCTATGTCCACCAGTGTGTCAAACCCACTCGAAATCTGCGTGAAGGCCTCCATCACT CAGCCAACCAAGCTCGGAGACTGCCCATTTTGCCAGAGGGTGTTGCTGACAATGGAGGAAAAGCGCGTACCTTATGACATTAAGTTGGTGGATTTGACTA ACAAGCCGGAATGGTTCTTGAAGCTAAGTCCAGAAGGTAAAGTCCCTGTTGTAAATCTTGAGGATAAATGGGTTCCAGATTCGGATGTAATTACTCAGTC ACTGGAAGAGAAATTCCCTGATCCACCATTGGCCACTCCAGCTGAGAAATCTTCTGTCGGCTCAAAGATATTCTCCACCTTTATTGGATTTCTTAAAAGC AAAGACCCTGCAGATGGAACAGAGCAGGCGTTGCTGAGTGAGCTAAGTTCTTTTGACGATTATATAAAACAAAATGGTCCTTACATCAACGGGGAAAAGG TGTCGGCGGCAGATCTGTCCCTGGGACCAAAGCTGTACCATCTGGAGATAGCGTTAGGTCATTATAAAAATTGGTCAGTTCCAGAGTCGTTGCCTCACGT CAAGTCGTACATGCAGACGATCTTCTCCATGGATTCCTTCGTCAAAACGCGTGCACTCCAGGACGACGTTATTGCTGATGTTGATGATACTGGAGTTGGA TCTGGAGACTTAATGTTCCAAGGCGAGTGGTTTGCAGAGATGGCTCAAGTGCTGCAATTGGAGGGGTTCTTCGAGAGGAGAATGACATTTGGATCGGTGG ATTTGCTAATGGGACCGGCACTCAATCGATTCTGCAGACTGAACTCTACGCTATTAGAGATGGTTGTCGTGGGTTCAGTCGTTGGGGTACACACAGGTGG AGGTCGAGACAGACTCCTTACTGGTTGTATACCTTCTCAATTCGAACACTACTTGCAATCACCCCCTTTGCTGTTTGATATTCGGACGATCCGTGTTGGA GGATGGAATTGCAAGATTAGACATGTACGTAGAGAGGCTAACTTGACGCGGATGTTCTTGCCAAGTTGGGTCATGCGGCTCGCCAAGGGGAAATGTGGTT CTCCAATCCTCCCTCGGAAATCCTGTGAATCAATAAATATAATAAACAAGTAA
AA sequence Show only first row Show all	>Lus10028510 pacid=23165958 polypeptide=Lus10028510 locus=Lus10028510.g ID=Lus10028510.BGIv1.0 annot-version=v1.0 MRAAFAAVGQFFWIGLSSPVMVCLKWWSMELLTLLSVFMSNPKLETSVLSICLSISTRHFTIPYGFGAAVRRSSIRRTLTFAMSTSVSNPLEICVKASIT QPTKLGDCPFCQRVLLTMEEKRVPYDIKLVDLTNKPEWFLKLSPEGKVPVVNLEDKWVPDSDVITQSLEEKFPDPPLATPAEKSSVGSKIFSTFIGFLKS KDPADGTEQALLSELSSFDDYIKQNGPYINGEKVSAADLSLGPKLYHLEIALGHYKNWSVPESLPHVKSYMQTIFSMDSFVKTRALQDDVIADVDDTGVG SGDLMFQGEWFAEMAQVLQLEGFFERRMTFGSVDLLMGPALNRFCRLNSTLLEMVVVGSVVGVHTGGGRDRLLTGCIPSQFEHYLQSPPLLFDIRTIRVG GWNCKIRHVRREANLTRMFLPSWVMRLAKGKCGSPILPRKSCESINIINK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10028510 [exp]	0	1
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	2.4	0.9288
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	4.6	0.9231
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	6.5	0.9117
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	7.9	0.9249
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	8.8	0.9101
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10023202 [exp]	9.7	0.9184
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10034205 [exp]	9.8	0.9199
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10035773 [exp]	13.0	0.9053
AT3G25660			Amidase family protein (.1)		Lus10020781 [exp]	14.0	0.8830
AT5G17870		PSRP6	plastid-specific 50S ribosomal...		Lus10028238 [exp]	15.5	0.8984

Compare expression of checked genes

Lus10028510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.