Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39790 297 / 5e-101 5'-AMP-activated protein kinase-related (.1) AT1G27070 77 / 2e-15 5'-AMP-activated protein kinase-related (.1) AT5G03420 62 / 2e-10 5'-AMP-activated protein kinase-related (.1) AT1G09020 43 / 0.0002 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT4G16360 42 / 0.0002 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036706 [exp] 66 / 6e-12 AT1G27070 323 / 8e-105 5'-AMP-activated protein kinase-related (.1) Lus10037220 [exp] 59 / 1e-09 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1) Lus10037504 [exp] 47 / 7e-06 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1) Lus10004490 [exp] 47 / 1e-05 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 47 / 2e-05 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037424 [exp] 42 / 0.0004 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10006516 [exp] 42 / 0.0004 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125400 [exp] 392 / 3e-138 AT5G39790 291 / 1e-98 5'-AMP-activated protein kinase-related (.1) Potri.008G194300 [exp] 70 / 2e-13 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) Potri.010G034600 [exp] 70 / 3e-13 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.006G123300 [exp] 66 / 5e-12 AT5G03420 279 / 9e-86 5'-AMP-activated protein kinase-related (.1) Potri.009G021600 [exp] 42 / 0.0002 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.008G216800 [exp] 42 / 0.0005 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028512 pacid=23166171 polypeptide=Lus10028512 locus=Lus10028512.g ID=Lus10028512.BGIv1.0 annot-version=v1.0 ATGGGATTTGCAGGGTGCTGTGTGGGCAAGGAAGTACCATGGTATTCATGGAGTTCGCATAACCTTTACATGGAAAGTGTCCATAGGCTTCCTTGCCATA TTGGTTGGGGCATGAAGACGAAGCTTCCTCATCTCGATTCTACTGCAAAGCATAGGAAGAGCCAAGTTTCTTATAGAACATTTAGGGTACCAGTTAGTTT GAAGGAATCATCATCATTTCAGCCAGAAGATTATTTTGGCGACAAAGGGAATAATAATGCATCGGAGGATTCCTCAGAAGAGCTGCTTGATAAACCATTG AATAGTGACCAGTTGAGGTTACTGTTGGCTGATTCAGAGAGGGGAAAGCTTGTCAAGAAACTAGGTGAAGCTAATCAGCAGAATCGTTTTCTGAAACGAC AGATGATGGTGAATGAAGAAACACTTGTTAGCTTCAAGACTGAACTTGCTGTGATGGAACTAGAAACTGAGGCTTTGGTTTCGTTGGCAGAAGAGATAGC TCAAGCCGGCATTCCCAAAGGTTCAAGGAAAATAAATGGGAAATACATCCAATCCCACCTCGTTTCTCGCTTACGTGTACTGCACGAAAAATTTGCGGAA CAAATGAAGGACGTGGTTGCTGCCCAGTCCAAAGAGGTCTCATTATTCTGGGTTGGGATGGCAGAGAATGTGGAAGTAATGGGTAGTTTTGATGGGTGGA GTCAAGGAGAGGACCTATCTCCGGACTACAATGGCTCTTTCACCAAATTCACTGCCACGCTAATGCTCAGACCCGGGAGGTACGAAATCAAATTCTTGGT GGATGGAGAATGGAAACTGTCGCCAGAATATCCTACCGTCGGAGAAGGCCTCACCCAAAACAACTTGCTCGTCGTTGAATAG
AA sequence Show only first row Show all	>Lus10028512 pacid=23166171 polypeptide=Lus10028512 locus=Lus10028512.g ID=Lus10028512.BGIv1.0 annot-version=v1.0 MGFAGCCVGKEVPWYSWSSHNLYMESVHRLPCHIGWGMKTKLPHLDSTAKHRKSQVSYRTFRVPVSLKESSSFQPEDYFGDKGNNNASEDSSEELLDKPL NSDQLRLLLADSERGKLVKKLGEANQQNRFLKRQMMVNEETLVSFKTELAVMELETEALVSLAEEIAQAGIPKGSRKINGKYIQSHLVSRLRVLHEKFAE QMKDVVAAQSKEVSLFWVGMAENVEVMGSFDGWSQGEDLSPDYNGSFTKFTATLMLRPGRYEIKFLVDGEWKLSPEYPTVGEGLTQNNLLVVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39790			5'-AMP-activated protein kinas...		Lus10028512 [exp]	0	1
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	4.5	0.9400
AT5G54290		CcdA	cytochrome c biogenesis protei...		Lus10037881 [exp]	5.1	0.9080
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10040083 [exp]	7.7	0.9270
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	7.7	0.9362
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	9.5	0.9287
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	14.7	0.9238
					Lus10008816 [exp]	15.2	0.9261
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	16.6	0.9245
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10009220 [exp]	16.8	0.8740
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10012831 [exp]	18.7	0.9186

Compare expression of checked genes

Lus10028512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.