Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24200 197 / 1e-51 Transcription elongation factor (TFIIS) family protein (.1) AT3G48050 71 / 4e-12 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 70 / 8e-12 BAH domain ;TFIIS helical bundle-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009128 [exp] 1696 / 0 AT4G24200 193 / 2e-50 Transcription elongation factor (TFIIS) family protein (.1) Lus10033586 [exp] 769 / 0 AT4G24200 147 / 5e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10017630 [exp] 709 / 0 AT4G24200 149 / 2e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10033410 [exp] 77 / 6e-14 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10042137 [exp] 76 / 2e-13 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241400 [exp] 681 / 0 AT4G24200 417 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Potri.002G020000 [exp] 673 / 0 AT4G24200 254 / 2e-70 Transcription elongation factor (TFIIS) family protein (.1) Potri.012G077700 [exp] 80 / 7e-15 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072800 [exp] 76 / 1e-13 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077500 [exp] 74 / 4e-13 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072900 [exp] 74 / 7e-13 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028515 pacid=23166181 polypeptide=Lus10028515 locus=Lus10028515.g ID=Lus10028515.BGIv1.0 annot-version=v1.0 ATGACGCTTGAAGATTTCTTTACCCTAACTGAAATGAAAGATGGGCTCACAGTCCCTTCTCGAGTACATGAGCTGCTTGCTGTAATGCAGAAGGAGAAAG ATTGTATCGTTAAGAACATCGGTGATGCACCTAGACAGTGGGCGGCAGTTTGCAGTACAATTGCTGCTACCGAGAATAGAGATTGTCTTGATCTTTTTAT TCAACTAGATGGACTCTGGTTCGTTGATAAATGGTTAAAGGAGGCCCTAAATAACAGCAGTGGTACAAGTGATGGTTTTATAGAAGAATCAATCACTGCA CTGTTAAGAGCAATAGAAAAGCTGAAAATAAACAAAACTAGGTCTCTTTCTTCAGGGATCTGGTCATCAGTCAATAACCTTATTCATCACTCTAGCTCCC GAGTTCAAGATAGAGCAAGAGCACTTTTTGATTCTTGGAAGAAGGATGATGATAGTCATGAATCTAGGAATGTTCAAGGGGTGGATGCCGTTGATGTGGT TTCTGGTGATATTGAGACAGCTAAGAACATTCTTGTGAAAGGAAGTGATGCCAACAAACAATGTACAGCTGAGCCTTCTAGTACTGAAGATACACGATCA AGAAGCTTAAACTGTCCTGAATCGGAGAGAGATCAAAATGTAGAATCTCATAACAGCAAGACTGGAACACATGCAGGCTTAGACCATGGAAACTGGGGAG ACATAGCCTTTGCTATGATCAATTGCAACCAAGGGAGCACTTCCTTGAAAGAGAAGACCTCTGTAGATTATGTAGAAGGAGCCGCCTCATCAGAGACTCG TACTTCTCTAGCTCAAAATGAACAAGGTGCTGGACCTGAGTCAGATGTCATAAATAATTCAAGCAACTTATGCGATAAAGCTTCCTCAATTGCTTCAGCT TCTACTAAACTGGTATCTGGAATAAACTTGACATCTGATGCTGCTAATATTCAAGGGACTAAGCCAGATCCTGATTTGCAAAAGAACTTTAGTGCCAAGG AGGGTAATAAATCTCGTAGTGTTTCTGTATCAGATGGCGACGAAACAGCTGTAGTGGCCCCTGAAGTTTCATCTGATAATAAACTTGATACCAGTGGCTG TAATCCATCAACGTCCAAATTAATTCCTAAAGACGACGAATGTCGTGATGTTTGGAATATTATAGGTGATGAGAAAGGATCGAGGAAATCTGGTGTTTTG AAGACTATGCCTAGGTTGGAAGATACTGAGCCTAATGAGGATGAAAGCAAGCACAGTAGTGATGGAGATGAGGAATTGGGAGAAAGCTACAATTTCTGTA AATCAGTATTTGACACCCAGAGTTCTTTCTCGACGAATAGAAGGAAGCCTGATTTTGAGCTCGAGTATGGTATAGTTGATGCTTTAGAAGTTGCGCGACA AGTTGCGCAGGAAGTTGAGAGGGAAGTAGAAGATTATAGAGAACCATCCGGAAGTTCTTCAGAAAAGATTACAGGGAGTAATAATAAGCAGCCTGGGAGC CCAAATTCCATAAGTGAGAAACAAACTGAATCCGGGGAGTTCCGAGCAGAAGATTTGGCATCATCAGACAATCAGGCTATACAACCCTCAACTGATGAAG GCATGCAGATCGATGATTCTAACCAGGCCAATAAAACAGGGAAACGTAAGATTGAGTTGGAGTCCTCTCAGGTAACTGAAGCAGCACGAGAACCCGAAGT TATAGAGAAAGGATTTTGTGGTTTTGATCTTAATGAAGAAGTCTCTTCAGATGATGCTGATCATCCTGCAGACTTGGTATCTGCACCGATTTCTATCGTT TCAGTATCAAGACCAGCTGCAACTTCAGCATCACCAGTGGCACCATTGCACTTTAAAGGAACTCTTGGGTGGAAGGGATCAGCAGCTACTAGTGCTTTTC GTCCAGCTTCTCCCCGCAAGGTTCTTGACATTGATCTGAATCTCAGTGAGAATAATGGAGATGAGAATGGAGGAGTTGGTTTAATGTTGGGGAGGCAACC CGCAACGTTACCCTTCTTCCAACGTGGGGAGTCTTCGTTGAATCCATGTACAAGTAAAACCGAGAGAGCCAACTTGGATTTGAATCTTACGAGTGATGAT GGTGAGATCACACCAGCCTCAACCTCCAGGAGGGAGGAAGGGCTCTTTTTTCTCCGGAATGGCCATCATCGCAGTCCTTCTCCTGCCTCTTCATCCTCAT CTTTGCGGCCATCATTGAAGAACTTTGATTTGAACGATAGGCCACTCTTCCATAATGATACTTCAGATCACAGATTATATCATGTCGAATCTTCTTCTCA AAGTTTCAATTTTTACGGAGGAGGACCGAGTCAAGGCGATCCCGTCATTTCTATCATGGGAGCTAAAGTCGAAGTTGGCAGAAAGGACTTCTTCCCGCAG ACTCCATCCTTGTCTACTATACCGAACGGTAAGCCCTCAGATCCTGCATTTGATACTAATATGGCAAGAATAGGAGTTATGGGAATGATTCCAACGGTAC CCTATGCGCCTTCTCCAGTCTTTGGTTACAATGGATACGCTGCAGCACCGCCCATGTCTTCGATGTATGGACCGGGCAGTCCAATCCCGTATATGGTGGA TTCAAGAGGTGCTCCTGTACTACCTCAAATGGTTAGTACTGCTCCATATTCTCAGCCACCGTTCATCATGAACATGGGCGTTGCACCCCTCGGTTTAAAT GGAGCAGGGCCATCACGGACACATTTCGATCTGAACTCAGGTTTTCCGAGTGAAGGAGGAAGCAATGGGGGTTTGAGGCAGTTCTTTGTGACGAATCAAC CACCCAGGTCCTTTGAGGAACATTTGAGGTCAAACCCACAACCTTCTTCCTCAAGTTCCGGAATGGCCGCTTCTGGGAAACGCAAAGAACCAGAAGGTGG ATGGGAGCCTTATAACTCGTTACATTATAAGCAACCACAACAACCTCCCTGGAGATGA
AA sequence Show only first row Show all	>Lus10028515 pacid=23166181 polypeptide=Lus10028515 locus=Lus10028515.g ID=Lus10028515.BGIv1.0 annot-version=v1.0 MTLEDFFTLTEMKDGLTVPSRVHELLAVMQKEKDCIVKNIGDAPRQWAAVCSTIAATENRDCLDLFIQLDGLWFVDKWLKEALNNSSGTSDGFIEESITA LLRAIEKLKINKTRSLSSGIWSSVNNLIHHSSSRVQDRARALFDSWKKDDDSHESRNVQGVDAVDVVSGDIETAKNILVKGSDANKQCTAEPSSTEDTRS RSLNCPESERDQNVESHNSKTGTHAGLDHGNWGDIAFAMINCNQGSTSLKEKTSVDYVEGAASSETRTSLAQNEQGAGPESDVINNSSNLCDKASSIASA STKLVSGINLTSDAANIQGTKPDPDLQKNFSAKEGNKSRSVSVSDGDETAVVAPEVSSDNKLDTSGCNPSTSKLIPKDDECRDVWNIIGDEKGSRKSGVL KTMPRLEDTEPNEDESKHSSDGDEELGESYNFCKSVFDTQSSFSTNRRKPDFELEYGIVDALEVARQVAQEVEREVEDYREPSGSSSEKITGSNNKQPGS PNSISEKQTESGEFRAEDLASSDNQAIQPSTDEGMQIDDSNQANKTGKRKIELESSQVTEAAREPEVIEKGFCGFDLNEEVSSDDADHPADLVSAPISIV SVSRPAATSASPVAPLHFKGTLGWKGSAATSAFRPASPRKVLDIDLNLSENNGDENGGVGLMLGRQPATLPFFQRGESSLNPCTSKTERANLDLNLTSDD GEITPASTSRREEGLFFLRNGHHRSPSPASSSSSLRPSLKNFDLNDRPLFHNDTSDHRLYHVESSSQSFNFYGGGPSQGDPVISIMGAKVEVGRKDFFPQ TPSLSTIPNGKPSDPAFDTNMARIGVMGMIPTVPYAPSPVFGYNGYAAAPPMSSMYGPGSPIPYMVDSRGAPVLPQMVSTAPYSQPPFIMNMGVAPLGLN GAGPSRTHFDLNSGFPSEGGSNGGLRQFFVTNQPPRSFEEHLRSNPQPSSSSSGMAASGKRKEPEGGWEPYNSLHYKQPQQPPWR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	0	1
AT1G67170			unknown protein		Lus10030976 [exp]	1.7	0.8828
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	3.2	0.8763
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	3.7	0.9283
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	4.0	0.9270
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	5.7	0.8662
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	7.1	0.8450
AT1G15680			F-box family protein (.1)		Lus10007302 [exp]	8.1	0.8558
AT5G47360			Tetratricopeptide repeat (TPR)...		Lus10019160 [exp]	8.7	0.8401
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	8.7	0.8535
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Lus10016954 [exp]	8.9	0.8249

Compare expression of checked genes

Lus10028515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.