Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66430 460 / 3e-162 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 410 / 2e-143 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 363 / 7e-125 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 352 / 1e-120 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 352 / 3e-120 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 350 / 7e-120 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 348 / 3e-119 STH pfkB-like carbohydrate kinase family protein (.1) AT1G50390 154 / 8e-46 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 131 / 4e-34 FLN1 fructokinase-like 1 (.1) AT1G69200 125 / 2e-31 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009126 [exp] 577 / 0 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 406 / 2e-141 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 404 / 1e-140 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 351 / 3e-120 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 351 / 3e-120 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 351 / 4e-120 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 350 / 1e-119 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 323 / 9e-110 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 290 / 3e-97 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G089300 [exp] 503 / 4e-179 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 490 / 5e-174 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 397 / 9e-138 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 390 / 2e-135 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 357 / 2e-122 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 355 / 1e-121 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 349 / 5e-119 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 137 / 2e-35 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 117 / 5e-29 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.014G074125 [exp] 77 / 4e-17 AT5G51830 80 / 7e-19 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10028517 pacid=23166092 polypeptide=Lus10028517 locus=Lus10028517.g ID=Lus10028517.BGIv1.0 annot-version=v1.0 ATGGCTCTACTTCACTCACCTGCTCTTCGCTTCGGCGGCGTGGGTCTCAATTCCCGCCATACTTCTGTTAGTTTCAGACCTGGAAATCTAAAACCGTCGT CATTCTCCTCTTCCCCTTCTCTCTCTCGTCGTTTGAGCTCCCGGGGTAAAGCTGCTTCAGCGGCTGAGGCAGATGACTCATCATCATCCCTTGTGGTTTG CTTTGGGGAAATGCTGATTGATTTTGTACCAACAATCAACGGCCTTTCGCTGGCTAATGCACCCGCCTTCAAGAAAGCCCCAGGAGGAGCTCCTGCCAAT GTTGCTGTTGGTATTTCTCGTCTTGGTGGCTCTTCGGCCTTCATTGGCAAGGTTGGCGAAGACGAATTTGGATATATGCTTTCTGAGATACTGAAGGAAA ACAATGTCAACAACCAAGGGTTGCGCTTTGATCCTGGTGCACGAACTGCTTTAGCCTTTGTTACGTTGAGGAGTGACGGCGAACGTGAATTTATGTTTTA CCGCAATCCTAGCGCTGATATGTTGCTCGAAGAAAGCGAACTTGATCTTGATTTGATTCGGAAGGCAAAGATCTTCCACTATGGATCTATAAGTCTTATA ACCGAGCCGTGCAAAACAGCTCATATTGCAGCAGCAAAGGCTGCGAAGGAAGCAGGTGTTGTTCTTTCTTACGATCCCAATCTTAGGCTTCCTCTTTGGT CTTCCGCAGAGAGTGCCAGAGAAGGCATCCTTAGCATTTGGAATTTGGCCGATATCATTAAGATAAGTGAAGAAGAAATATCCTTCTTAACTCAAGGAGA AGATCCATACGATGATGCTGTTGTCCGCAAGCTGTACCATCCAAATCTTAAGTTGCTGCTTGTTACCGTGGGCCCAGATGGTTGCAGATATTACACCAAG GATTTTAGCGGTAGAGTGAAAGGCGTAAAGGTTGAGGCTATTGACACCACCGGTGCTGGTGATGCTTTTGTGGCTGGAATATTGTCTCAACTAGCAGGGG ACTTATCCTTGCTTCAGAATGAGGAAAAGTTGAGAGATGCTCTCAAGTTTGCGAATGCTTGCGGTGCATTGACAGTCATGGAAAGAGGTGCGATACCAGC CTTGCCAACAAGAGAAGCAGTAAAAGATGCAGTCCTTAAGATCGCTGCATAA
AA sequence Show only first row Show all	>Lus10028517 pacid=23166092 polypeptide=Lus10028517 locus=Lus10028517.g ID=Lus10028517.BGIv1.0 annot-version=v1.0 MALLHSPALRFGGVGLNSRHTSVSFRPGNLKPSSFSSSPSLSRRLSSRGKAASAAEADDSSSSLVVCFGEMLIDFVPTINGLSLANAPAFKKAPGGAPAN VAVGISRLGGSSAFIGKVGEDEFGYMLSEILKENNVNNQGLRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLEESELDLDLIRKAKIFHYGSISLI TEPCKTAHIAAAKAAKEAGVVLSYDPNLRLPLWSSAESAREGILSIWNLADIIKISEEEISFLTQGEDPYDDAVVRKLYHPNLKLLLVTVGPDGCRYYTK DFSGRVKGVKVEAIDTTGAGDAFVAGILSQLAGDLSLLQNEEKLRDALKFANACGALTVMERGAIPALPTREAVKDAVLKIAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10028517 [exp]	0	1
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10009126 [exp]	1.0	0.9531
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	3.5	0.9233
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10008792 [exp]	3.7	0.8882
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	4.6	0.9277
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	5.3	0.9329
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10012652 [exp]	6.0	0.9096
AT3G59420		ACR4	crinkly4 (.1)		Lus10000764 [exp]	7.3	0.8767
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10006210 [exp]	8.1	0.8893
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	10.4	0.9027
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	11.3	0.9078

Compare expression of checked genes

Lus10028517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.