Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37790 570 / 0 Protein kinase superfamily protein (.1) AT1G66460 539 / 0 Protein kinase superfamily protein (.1) AT1G77280 264 / 2e-79 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 254 / 7e-79 Protein kinase superfamily protein (.1.2.3) AT2G16750 244 / 2e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 244 / 1e-72 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 245 / 2e-72 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G18890 212 / 1e-63 Protein kinase superfamily protein (.1.2) AT5G35960 213 / 3e-63 Protein kinase family protein (.1) AT5G65530 212 / 1e-62 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009125 [exp] 845 / 0 AT5G37790 607 / 0.0 Protein kinase superfamily protein (.1) Lus10017631 [exp] 630 / 0 AT5G37790 601 / 0.0 Protein kinase superfamily protein (.1) Lus10033588 [exp] 624 / 0 AT5G37790 591 / 0.0 Protein kinase superfamily protein (.1) Lus10028661 [exp] 255 / 2e-76 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 255 / 3e-76 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 222 / 5e-66 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10039518 [exp] 226 / 6e-66 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 226 / 1e-65 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006957 [exp] 214 / 9e-65 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126500 [exp] 642 / 0 AT5G37790 658 / 0.0 Protein kinase superfamily protein (.1) Potri.004G089100 [exp] 629 / 0 AT5G37790 666 / 0.0 Protein kinase superfamily protein (.1) Potri.007G102400 [exp] 254 / 4e-76 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 253 / 2e-75 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 248 / 5e-74 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 246 / 7e-73 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 236 / 1e-69 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 226 / 3e-66 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 229 / 4e-66 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.018G096100 [exp] 221 / 8e-65 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028518 pacid=23166076 polypeptide=Lus10028518 locus=Lus10028518.g ID=Lus10028518.BGIv1.0 annot-version=v1.0 ATGGGAATCTTTCAGGACAGTCCCTGTTTTCTTCACTGCTCCACTTCTTCACTTTCATCTTCTTCCTCTTCTTCGTCTTCTTCAACCTTTTCTTCCTTCC CTATCGCCGTCTTTGATCACAACAATGAGACAGGGCAGCAGCAGCAGCCGTCAAAACCCCTTTTGACCAAAATGGTGTGGCTATTCGGACTGTCCTGTTT CCTCCCCGGCGGCGAAGGAACGAATAAGAACGCCGGAGGAGGAGGAGAAAGTAGCAGTAATAATAATAATACGGAGAACCACAAGGCTTGGCTGGTGGCA GAGTTCAGCTTCTGCTCTCAGGTGGAGCTGGATTCCATGAACATATCTTCGGCGACAGTGCTAATGGTGAATCTGGACAATGGGGGTTTGGCTAAGGATC AGCTCGGGTGGAGAAGAATCCAGTCTCTTGAGAGGAGCATCTCCCCTGTCGCTAATTCCTTGATTCGGTTCCACTACAGCGAGATTCTCGCCGCCACCAG TAATTTCTCCCAAGGTAAAGTGTTGGGAAGGGGAGCTTTGAGCTATGTGTACAGAGGAAGAGTTGGGGTTTTGAGGACTTGTGTAGCGATAAAGAGGTTA GACAAAGAGGACAAAGAGTCTTCCAAGGCATTCTGTAGAGAGTTAATGATTGCTAGCTCTCTTCACCACCAAAACATTGTCCCTCTTCTGGGTTTCTGCA TTCATCCTGAGGAAGGCTTGTTCTTGGTCTACAAGTATGCCTCTGGTGGCAGCTTGGAGCGCCACTTACATGAGAGGAAGAAGAAGAAGAGAAGAGGAGT AAAGGGAAATTCTTCAACACTTGCTTGGGCAGTGAGGTACAAGGTAGCTATTGGAGTTGCAGAGGCGATTGCATATTTGCACAGTGGGACTGAGAGATGT GTTGTCCACAGAGATATCAAGCCTTCAAACATACTCCTTTCTTCCAAGAACATCCCCAAGTTGTGTGATTTTGGGTTGGCTGCCTGGACTTCTTCACCTT GTGTGCCCTTCCTTTGCAAAACTGTCAAGGGAACATTTGGTTACTTGGCTCCTGAGTATTTCCAGCACGGCAAGGTATCAGATAAGACTGATGTATATGC TTTCGGGGTGGTCCTCCTTGAACTAATCACTGGAAGAAAACCAATCGAAGCAATTCGCCCGCCCGGAGAAGAGAATTTAGTCCTGTGGGCGAAACCGCTG CTGGACAAAGGCAAAGGAGCGATCGAGGAGCTGCTCGACCCAAGCATAACATGCACCACGAGAAACATATCGCAGATAACGCAGATGATCCGAGCTGCTG CAGCGTGCGTGAGCAGCGAGGAATCTCGTAGGCCGGGGATTAACGAGATTGTTGCGATATTAAAAGGAGACGAAGAAACGACATCATCATCATTGTCAGC AGGTACAGTGTTGTCAAGTAGCAGCAGGAAGAAGTCTAACTTGGTTGCGGGGATCATAGACTGCTATCCTTATCAACTACAACATACAAACAGTGAGTTG AAGAGCCACTTGGCTTTGGCGATGCTCGGGGTTTCGGAGCTTGAGGATGATGATCACCTCTACTATCGATGA
AA sequence Show only first row Show all	>Lus10028518 pacid=23166076 polypeptide=Lus10028518 locus=Lus10028518.g ID=Lus10028518.BGIv1.0 annot-version=v1.0 MGIFQDSPCFLHCSTSSLSSSSSSSSSSTFSSFPIAVFDHNNETGQQQQPSKPLLTKMVWLFGLSCFLPGGEGTNKNAGGGGESSSNNNNTENHKAWLVA EFSFCSQVELDSMNISSATVLMVNLDNGGLAKDQLGWRRIQSLERSISPVANSLIRFHYSEILAATSNFSQGKVLGRGALSYVYRGRVGVLRTCVAIKRL DKEDKESSKAFCRELMIASSLHHQNIVPLLGFCIHPEEGLFLVYKYASGGSLERHLHERKKKKRRGVKGNSSTLAWAVRYKVAIGVAEAIAYLHSGTERC VVHRDIKPSNILLSSKNIPKLCDFGLAAWTSSPCVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEAIRPPGEENLVLWAKPL LDKGKGAIEELLDPSITCTTRNISQITQMIRAAAACVSSEESRRPGINEIVAILKGDEETTSSSLSAGTVLSSSSRKKSNLVAGIIDCYPYQLQHTNSEL KSHLALAMLGVSELEDDDHLYYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	0	1
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	2.4	0.8625
AT5G37790			Protein kinase superfamily pro...		Lus10009125 [exp]	4.0	0.8172
AT5G50230			Transducin/WD40 repeat-like su...		Lus10018081 [exp]	5.1	0.8685
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	10.0	0.8492
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	10.0	0.8072
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	10.7	0.8485
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	15.7	0.8424
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10006325 [exp]	15.8	0.8559
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	15.8	0.8301
AT3G61790			Protein with RING/U-box and TR...		Lus10030248 [exp]	16.2	0.8116

Compare expression of checked genes

Lus10028518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.